PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG037576t5 | ||||||||
Common Name | TCM_037576 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NF-YA | ||||||||
Protein Properties | Length: 229aa MW: 25455.4 Da PI: 9.2077 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.2 | 2.3e-32 | 71 | 127 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh hAl+R RgsgGrF Thecc1EG037576t5 71 DGPIYVNAKQYHGILRRRQYRAKLEAQNKL-VKARKPYLHESRHLHALNRVRGSGGRF 127 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.4E-36 | 69 | 130 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.271 | 70 | 130 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.4E-27 | 73 | 127 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.7E-24 | 73 | 95 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 75 | 95 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.7E-24 | 104 | 127 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MKPVFLLNNP NTVFSPSHPN YNHSMAYARN PYADAYFGGL FTPYGQQAII QPQVAGSAPT 60 RIPLPLDLDE DGPIYVNAKQ YHGILRRRQY RAKLEAQNKL VKARKPYLHE SRHLHALNRV 120 RGSGGRFLPT KKLQQCDPTF NTSSHCISDT SCSDQKNSRS EFESRCSHTA EYVGSSTSCS 180 DITSVSNSDG NFQQPEHRFS DISPHVGSHM RNSGSMCNGI QHCASIVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-20 | 71 | 132 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007012703.1 | 1e-171 | PREDICTED: nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_007012705.1 | 1e-171 | PREDICTED: nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A061GLB1 | 1e-170 | A0A061GLB1_THECC; Nuclear transcription factor Y subunit A-3, putative isoform 5 | ||||
TrEMBL | A0A061GLP6 | 1e-170 | A0A061GLP6_THECC; Nuclear transcription factor Y subunit A-3, putative isoform 1 | ||||
STRING | EOY30324 | 1e-171 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 2e-42 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG037576t5 |
Entrez Gene | 18588323 |
Publications ? help Back to Top | |||
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