PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG037576t4 | ||||||||
Common Name | TCM_037576 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NF-YA | ||||||||
Protein Properties | Length: 339aa MW: 37383.5 Da PI: 7.9737 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.3 | 4.5e-32 | 181 | 237 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh hAl+R RgsgGrF Thecc1EG037576t4 181 DGPIYVNAKQYHGILRRRQYRAKLEAQNKL-VKARKPYLHESRHLHALNRVRGSGGRF 237 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 28 | No hit | No description |
SMART | SM00521 | 7.4E-36 | 179 | 240 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.271 | 180 | 240 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.6E-27 | 183 | 237 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.5E-23 | 183 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 185 | 205 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.5E-23 | 214 | 237 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MAIRVQNLPK KNIDESSVHS LSHLSVSCPP WWNSNEQQIA QTLPQNITLK VETPSQLYHN 60 AKHLGLQLPD QESSSAQAIG QSHHEVGVIG VTNSQCNSSE SGQDESCGKD IEGQMKPVFL 120 LNNPNTVFSP SHPNYNHSMA YARNPYADAY FGGLFTPYGQ QAIVAGSAPT RIPLPLDLDE 180 DGPIYVNAKQ YHGILRRRQY RAKLEAQNKL VKARKPYLHE SRHLHALNRV RGSGGRFLPT 240 KKLQQCDPTF NTSSHCISDT SCSDQKNSRS EFESRCSHTA EYVGSSTSCS DITSVSNSDG 300 NFQQPEHRFS DISPHVGSHM RNSGSMCNGI QHCASIVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-19 | 183 | 242 | 4 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007012703.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_007012705.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A061GKD6 | 0.0 | A0A061GKD6_THECC; Nuclear transcription factor Y subunit A-3, putative isoform 4 | ||||
STRING | EOY30324 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17590.4 | 1e-42 | nuclear factor Y, subunit A8 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG037576t4 |
Entrez Gene | 18588323 |
Publications ? help Back to Top | |||
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