PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037559t1
Common NameTCM_037559
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 350aa    MW: 39346.5 Da    PI: 7.3399
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037559t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++ Ed++l +++k +G g W+  +++ g++R++k+c++rw++yl
  Thecc1EG037559t1 14 RGAWSAREDKILTNYIKIHGEGKWRDLPQRAGLKRCGKSCRLRWLNYL 61
                      89********************************************97 PP
2Myb_DNA-binding53.74.9e-1767111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ + eE+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ 
  Thecc1EG037559t1  67 RGNISSEEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                       7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.282961IPR017930Myb domain
SuperFamilySSF466893.59E-2811108IPR009057Homeodomain-like
SMARTSM007172.7E-121363IPR001005SANT/Myb domain
PfamPF002491.4E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-221568IPR009057Homeodomain-like
CDDcd001671.29E-81661No hitNo description
PROSITE profilePS5129425.12562116IPR017930Myb domain
SMARTSM007176.6E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2469116IPR009057Homeodomain-like
CDDcd001675.61E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRKPCCAKV GLNRGAWSAR EDKILTNYIK IHGEGKWRDL PQRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SSEEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRVQSNK  120
NVTPKGTQTS NMQLNKLRKL GCIKSSQMEI TTAEHKVIRT KAVKCTKAVN VNVPHLSDCQ  180
TAENNSVPKS ESTTASESPS SSAINEDNSM DFLIDFDINE LLVSDAPISD LHQTQQVDEN  240
GENVVDNWEC RNGFNLNIDD VELYSSVDEL ARPDNWRAST DLFQTSETLD LLIVLKRKEA  300
ETARTPKIHE EYRKASALSN ENGEDEIELF LCTSCVLGGV CSLSAWLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982183.10.0PREDICTED: myb-related protein 330
TrEMBLA0A061GKB60.0A0A061GKB6_THECC; Duplicated homeodomain-like superfamily protein
STRINGEOY303000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-61MYB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]