PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG037555t1

Common Name

TCM_037555

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 304aa MW: 34195.3 Da PI: 8.493

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037555t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l +++k +G g+W+ +++ g++R++k+c++rw++yl Thecc1EG037555t1 14 RGAWTAHEDKILTEYIKAHGEGSWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	52.2	1.4e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Thecc1EG037555t1 67 RGNISADEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.402	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.59E-28	12	108	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.68E-10	16	61	No hit	No description
PROSITE profile	PS51294	24.964	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	9.4E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	7.28E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGRNPCCSKE GLNRGAWTAH EDKILTEYIK AHGEGSWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SADEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVQHHQ 120 NPSAAPGHNK SNGRVTRKRE AQLATSAGTP SSHVVRTRAI RCSKVFINPH QKIEPFDRNR 180 EAKPSIDGEC RPMTQTSAPS PIKALSENED QNVHNKPFDF MVDFNMGEFC LSELLNSDFS 240 DLVGLNYSND SSNAISPSSD QPLIFSEEIL QDWTSSHHAQ QNVASNPHSL ASFLDYGEEW 300 LAE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-25	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF336282	1e-97	AF336282.1 Gossypium hirsutum GHMYB10 (ghmyb10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007012678.2	0.0	PREDICTED: transcription factor TT2
TrEMBL	A0A061GMC6	0.0	A0A061GMC6_THECC; GHMYB10, putative
STRING	EOY30297	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	5e-63	MYB family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG037555t1
Entrez Gene	18588305

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]