PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037550t3
Common NameTCM_037550
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRF
Protein Properties Length: 378aa    MW: 42834.6 Da    PI: 8.2345
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037550t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.4e-2577120144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Thecc1EG037550t3  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 120
                       79***************************************998 PP
2QLQ58.42.1e-20943236
               QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                      +FTa+Q+q+L++Q+l++Ky++++ P+Pp+Ll+ i+
  Thecc1EG037550t3  9 PFTASQWQELEHQALIFKYMVSGIPIPPDLLFTIK 43
                      8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.8E-12844IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.472944IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-15942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9877121IPR014977WRC domain
PfamPF088791.3E-2078120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MMSGRNRFPF TASQWQELEH QALIFKYMVS GIPIPPDLLF TIKRSCLDSS LSSRLFSRQP  60
QHIGWNCFQM GLGRKVDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE  120
VTTATIANPS TATPNISSIT KTHPSSFSSL SSMSLSSSES QQHHHQLRYP GYHSQVNHPF  180
LYPHASRPPG IGLSPQENTT HPLLDSGTYS QTNTDYSYVY GLKEEVDEHA FFSEPSGTMR  240
SFSGPSVDDS WQLTPLTMSS SFSKQRSCSG LQSEYSYLQL QSLTDHTSKQ NKQDDEHCYI  300
LGSDIKCEMP IKLEKGEPQK TVHRFFDEWP PKHRDSWLDL DDKSSNSSSV STTRLSISIP  360
STSHDFPIFN SRAHNDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826621e-52AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012669.20.0PREDICTED: growth-regulating factor 1 isoform X3
TrEMBLA0A061GLL50.0A0A061GLL5_THECC; Growth-regulating factor 5 isoform 3
STRINGEOY302870.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-50growth-regulating factor 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]