PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG037487t1 | ||||||||
Common Name | TCM_037487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 150aa MW: 16443.1 Da PI: 9.4256 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.5e-19 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +g+WvAe+r p++ r+r++lg++ taeeAa+a++aa +l+g Thecc1EG037487t1 19 RYKGVRMRK-WGKWVAEVRQPNS---RRRIWLGSYKTAEEAARAYDAAVFCLRG 68 6******99.*******888732...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.48E-29 | 18 | 78 | No hit | No description |
PROSITE profile | PS51032 | 23.09 | 19 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 19 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-22 | 19 | 78 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.4E-36 | 19 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.4E-14 | 19 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-10 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 150 aa Download sequence Send to blast |
MVRPGRGRDN GVNNNSSARY KGVRMRKWGK WVAEVRQPNS RRRIWLGSYK TAEEAARAYD 60 AAVFCLRGSS GKLNFPDNPP DIADASELTP AQIQEAAFRH ARKDITEEAE VKEEMAAGGN 120 SNGECYFGGG SVGDRSGGTY YHSSGFWTF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 19 | 76 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007012585.2 | 2e-96 | PREDICTED: ethylene-responsive transcription factor ERF016 | ||||
Swissprot | Q9C591 | 6e-35 | ERF16_ARATH; Ethylene-responsive transcription factor ERF016 | ||||
Swissprot | Q9S7L5 | 5e-35 | ERF18_ARATH; Ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A061GSY0 | 1e-106 | A0A061GSY0_THECC; Integrase-type DNA-binding superfamily protein, putative | ||||
STRING | EOY30204 | 1e-107 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G74930.1 | 9e-30 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG037487t1 |
Entrez Gene | 18588241 |
Publications ? help Back to Top | |||
---|---|---|---|
|