PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037487t1
Common NameTCM_037487
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 150aa    MW: 16443.1 Da    PI: 9.4256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037487t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-191968255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +ykGVr +k +g+WvAe+r p++   r+r++lg++ taeeAa+a++aa  +l+g
  Thecc1EG037487t1 19 RYKGVRMRK-WGKWVAEVRQPNS---RRRIWLGSYKTAEEAARAYDAAVFCLRG 68
                      6******99.*******888732...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.48E-291878No hitNo description
PROSITE profilePS5103223.091976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-301977IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-221978IPR016177DNA-binding domain
SMARTSM003808.4E-361982IPR001471AP2/ERF domain
PfamPF008477.4E-141968IPR001471AP2/ERF domain
PRINTSPR003675.5E-102031IPR001471AP2/ERF domain
PRINTSPR003675.5E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MVRPGRGRDN GVNNNSSARY KGVRMRKWGK WVAEVRQPNS RRRIWLGSYK TAEEAARAYD  60
AAVFCLRGSS GKLNFPDNPP DIADASELTP AQIQEAAFRH ARKDITEEAE VKEEMAAGGN  120
SNGECYFGGG SVGDRSGGTY YHSSGFWTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1519761472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012585.22e-96PREDICTED: ethylene-responsive transcription factor ERF016
SwissprotQ9C5916e-35ERF16_ARATH; Ethylene-responsive transcription factor ERF016
SwissprotQ9S7L55e-35ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A061GSY01e-106A0A061GSY0_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOY302041e-107(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.19e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  5. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]