PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037455t2
Common NameTCM_037455
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 542aa    MW: 57736.7 Da    PI: 5.327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037455t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11303348555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR++i +++ +L+el+P++      K +Ka++L + +eY+k Lq
  Thecc1EG037455t2 303 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIEYVKFLQ 348
                       99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.91E-12296352No hitNo description
SuperFamilySSF474599.16E-17296358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.161298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16300357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-9303348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MDDYLDQYFS SSSWSDVNVN ERSSWVHCEP DQPNALLPSS IGVYQDDKTS SPVRMISSNH  60
TMGCLAAQDR IPSGESGCGV ELGLLSGEGE PQMDGQNCSS NSTKEMLNGS LAFANVELQF  120
NTAVHSSGSL SLGSPKDLSV VGDLTPSLSF NERGHVICNE GESSEFRRSL TGLETLSPIP  180
KLWHPQPYDG VSSLPTLMGQ TRMEISCLQG ENGTVNNDGN INRFVEIDKI LQPENLSASI  240
SAKGKQDMKN SLYSSFPAEH QITKTMIGLP SLLQSASPTP NNGCNGIGKP RVRARRGQAT  300
DPHSIAERLR REKIAERMKN LQELVPNSNK TDKASMLDEI IEYVKFLQLQ VKVLSMSRLG  360
AAGAVVPLIT DCQAEGSNGL SLSPLAGQGV DFSASPDQVV FEQEVVKLME SNVTMAMQYL  420
QSKGLCLMPI ALANAISNGK ASSSSSSSSG PASEERKKFG FTKGLVNNDI VHNTCTSNGL  480
VQNSNCSSSS SSSSGSLPGV GIHYLSSDGH FMIGKLSGGL LANGCNGSFK QEEMNTLCTA  540
K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012525.20.0PREDICTED: uncharacterized protein LOC18588211
TrEMBLA0A061GSQ00.0A0A061GSQ0_THECC; Transcription factor bHLH69, putative isoform 1
STRINGEOY301440.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.16e-60LJRHL1-like 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]