PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037383t2
Common NameTCM_037383
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 204aa    MW: 23630.8 Da    PI: 9.2191
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037383t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.7e-191765148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l+++++ +G+++Wk++a++   ++R++k+c++rw +yl
  Thecc1EG037383t2 17 RGAWTAEEDQKLAQVIEIHGPKRWKSVAAKAAgLNRCGKSCRLRWMNYL 65
                      89*********************************************97 PP
2Myb_DNA-binding521.6e-1671116148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
  Thecc1EG037383t2  71 RGNISDQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 116
                       78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.4031269IPR017930Myb domain
SuperFamilySSF466891.8E-2915112IPR009057Homeodomain-like
SMARTSM007172.1E-161667IPR001005SANT/Myb domain
PfamPF002494.1E-181765IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241872IPR009057Homeodomain-like
CDDcd001671.19E-111965No hitNo description
SMARTSM007172.2E-1570118IPR001005SANT/Myb domain
PROSITE profilePS5129421.01270120IPR017930Myb domain
PfamPF002491.4E-1471116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2573121IPR009057Homeodomain-like
CDDcd001674.55E-1075116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MPKAPISTKC TRKEVNRGAW TAEEDQKLAQ VIEIHGPKRW KSVAAKAAGL NRCGKSCRLR  60
WMNYLRPNIK RGNISDQEED LIVRLHKLLG NRWSLIAGRL PGRTDNEIKN YWNSHLSKKI  120
KQNEKQNRSS RMQEPVLENS KVSDMDTVPK ESEEGTFKRD DNDSKSCSIG DIFFNFHSEE  180
PLNLDWMSPF LEMDETWFNF AYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-311412024128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5822973e-42JX582297.1 Gossypium hirsutum clone NBRI_GE15106 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012415.11e-148PREDICTED: transcription factor MYB114
SwissprotQ388501e-51MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A061GJG61e-150A0A061GJG6_THECC; Myb domain protein 5 isoform 2
STRINGEOY300351e-151(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.16e-54myb domain protein 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]