PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037383t1
Common NameTCM_037383
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 203aa    MW: 23559.7 Da    PI: 9.2191
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037383t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding651.4e-201764148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l+++++ +G+++Wk++a++ g++R++k+c++rw +yl
  Thecc1EG037383t1 17 RGAWTAEEDQKLAQVIEIHGPKRWKSVAAKAGLNRCGKSCRLRWMNYL 64
                      89********************************************97 PP
2Myb_DNA-binding521.6e-1670115148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
  Thecc1EG037383t1  70 RGNISDQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 115
                       78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.5051268IPR017930Myb domain
SuperFamilySSF466897.7E-3015111IPR009057Homeodomain-like
SMARTSM007175.3E-171666IPR001005SANT/Myb domain
PfamPF002491.7E-191764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-251871IPR009057Homeodomain-like
CDDcd001674.28E-121964No hitNo description
SMARTSM007172.2E-1569117IPR001005SANT/Myb domain
PROSITE profilePS5129421.01269119IPR017930Myb domain
PfamPF002491.4E-1470115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2572120IPR009057Homeodomain-like
CDDcd001674.90E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MPKAPISTKC TRKEVNRGAW TAEEDQKLAQ VIEIHGPKRW KSVAAKAGLN RCGKSCRLRW  60
MNYLRPNIKR GNISDQEEDL IVRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKIK  120
QNEKQNRSSR MQEPVLENSK VSDMDTVPKE SEEGTFKRDD NDSKSCSIGD IFFNFHSEEP  180
LNLDWMSPFL EMDETWFNFA YI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-31141191105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5822973e-42JX582297.1 Gossypium hirsutum clone NBRI_GE15106 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012415.11e-150PREDICTED: transcription factor MYB114
SwissprotQ388505e-53MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A061GSC71e-149A0A061GSC7_THECC; Myb domain protein 5 isoform 1
STRINGEOY300351e-148(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-55myb domain protein 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]