PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG037380t1 | ||||||||
Common Name | TCM_037380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 94aa MW: 10966.8 Da PI: 10.6837 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l d vk +G g W +Ia++ ++R++k+c++rw++yl Thecc1EG037380t1 13 KGAWTAFEDQILRDHVKIHGVGKWGKIAEKTSLKRCGKSCRLRWLNYL 60 79******************************9**************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-22 | 8 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.63 | 8 | 64 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.53E-22 | 14 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.28E-10 | 15 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-7 | 64 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 94 aa Download sequence Send to blast |
MGRTPYTDGR LNKGAWTAFE DQILRDHVKI HGVGKWGKIA EKTSLKRCGK SCRLRWLNYL 60 RPDIKRRNIS QDEEDLIIRL HRLLGNRFCL YGL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-16 | 8 | 89 | 22 | 102 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021276938.1 | 1e-49 | transcription factor WER-like | ||||
Swissprot | Q9FJA2 | 5e-33 | TT2_ARATH; Transcription factor TT2 | ||||
Swissprot | Q9SEI0 | 4e-33 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A061GKG8 | 6e-62 | A0A061GKG8_THECC; Duplicated homeodomain-like superfamily protein | ||||
STRING | EOY30031 | 1e-62 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-35 | myb domain protein 66 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG037380t1 |
Entrez Gene | 18588145 |