PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG037359t1

Common Name

TCM_037359

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Nin-like

Protein Properties

Length: 534aa MW: 59105.5 Da PI: 5.5248

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037359t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	23.2	1.4e-07	441	491	3	50
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqy.G..IkRWPhRkik 50 k ++++dl+ +F++ kdAA+ L+++ TvL i + G +RWP+R i+ Thecc1EG037359t1 441 KMLTFDDLKPFFEMLRKDAARRLNLSETVLHNIFDEAtGkkGRRWPYREIA 491 789**************************997664131137***996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.876	422	513	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-7	443	491	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MADPNANDPD DDPHYVPLVD EALNFMNNME PILPDDAMNI FMGNVNHPFM DDSRNNFLNA 60 INPTLFGNSS SDNSDVLNLR VNSQSDPSMN NLRTSTQMQQ NFENEDLNNL HVPTRVNSTV 120 QEPSQHPFIP QSEQEATNPL QIATNGEGMH SEPNLENAQA SMRNELNLEN SPTGMRKEPN 180 LENSQVETGF GIQRLDRNKG KLSVGLSRPP PSGCSGCQML REITHRKGSL VKKLQIHGEL 240 SRGRFFHALN NVLDDDTTVV LDAENIDFYD KGYRDVEKFL SQYFIKQEQE GWSMHDDPRA 300 VFFKVLCFGP GGVQTGEAAN TSNREKNPVP PTAGVLATAP AEAANTSNRE KNPVPPTARV 360 LATAPAEAAN TSNREKNPVR QTARVLATAP AEASNHSNAE AANTSISQAG QVAATGSHET 420 TNPNNSGRRS INLSEQRKRI KMLTFDDLKP FFEMLRKDAA RRLNLSETVL HNIFDEATGK 480 KGRRWPYREI AANRRKIAKL TAIADSTDNP AASDRARDEI RTLEEQIDAL YRP*

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MADPNANDPD DDPHYVPLVD EALNFMNNME PILPDDAMNI FMGNVNHPFM DDSRNNFLNA  60
INPTLFGNSS SDNSDVLNLR VNSQSDPSMN NLRTSTQMQQ NFENEDLNNL HVPTRVNSTV  120
QEPSQHPFIP QSEQEATNPL QIATNGEGMH SEPNLENAQA SMRNELNLEN SPTGMRKEPN  180
LENSQVETGF GIQRLDRNKG KLSVGLSRPP PSGCSGCQML REITHRKGSL VKKLQIHGEL  240
SRGRFFHALN NVLDDDTTVV LDAENIDFYD KGYRDVEKFL SQYFIKQEQE GWSMHDDPRA  300
VFFKVLCFGP GGVQTGEAAN TSNREKNPVP PTAGVLATAP AEAANTSNRE KNPVPPTARV  360
LATAPAEAAN TSNREKNPVR QTARVLATAP AEASNHSNAE AANTSISQAG QVAATGSHET  420
TNPNNSGRRS INLSEQRKRI KMLTFDDLKP FFEMLRKDAA RRLNLSETVL HNIFDEATGK  480
KGRRWPYREI AANRRKIAKL TAIADSTDNP AASDRARDEI RTLEEQIDAL YRP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021276287.1	0.0	uncharacterized protein LOC110410746
TrEMBL	A0A061GLH3	0.0	A0A061GLH3_THECC; Uncharacterized protein isoform 1
STRING	EOY30002	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Link Out ? help Back to Top
Phytozome	Thecc1EG037359t1
Entrez Gene	18588124

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]