PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037308t4
Common NameTCM_037308
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 400aa    MW: 44983 Da    PI: 4.4627
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037308t4genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35581492102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k++e++ed+++++++sws+  nsf+v+d+++f++++Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+ll
  Thecc1EG037308t4  58 FLTKTFEMVEDPSTDSVVSWSKARNSFIVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLL 141
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++ikr+++
  Thecc1EG037308t4 142 KTIKRRRN 149
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-3454147IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-6054147IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.7E-3854147IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.0E-195881IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3158147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434097121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-19109121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEGVVIKEEE TVTFAAGTAG LSSSSSSSSS SSSSSPSSSS KVTPQPMEGL NEVGPPPFLT  60
KTFEMVEDPS TDSVVSWSKA RNSFIVWDSH KFSTTLLPRY FKHSNFSSFI RQLNTYGFRK  120
VDPDRWEFAN EGFLGGQKHL LKTIKRRRNI LQSSQQQGEG ACVELGQFGL EGKLERLRRD  180
RTVLLAEIVR LRQQQQHSRD QIVAMEDRLQ STERKQQQIM TFLAKALRNP TFFQQFAQKK  240
QMQGVEIGRK RRLTANPSIE NLQEEAIPVV VDTEQVLNYA NQEQEELATI ESEIETFFTS  300
ALDNESSSEI KYPITSSEPT SGGANLGSVN DTIWEEFISD DLIAVEQEEE IVVGDQAEVD  360
VEVEDLAVNP EDWGDDLQDL VDQMGYLRRQ KFMGNLFNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-254914717129Heat shock factor protein 1
5d5v_B2e-254914717129Heat shock factor protein 1
5d5v_D2e-254914717129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146LKTIKRR
2175180RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012309.20.0PREDICTED: heat shock factor protein HSF30
SwissprotP411521e-146HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A061GKJ00.0A0A061GKJ0_THECC; Heat shock transcription factor A2 isoform 4
STRINGEOY299280.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116722732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-120heat shock transcription factor A2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]