PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG037293t1 | ||||||||
Common Name | TCM_037293 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LBD | ||||||||
Protein Properties | Length: 243aa MW: 26598.4 Da PI: 7.9103 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.7 | 2.2e-39 | 15 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkC+++C lap fpa+++k+f n+hklFG+sn+lk++++l++ +r +am+s+v+eA+ ra+dPv G++g+i++l+ q++ +kae Thecc1EG037293t1 15 ACAACKYQRRKCTRNCLLAPFFPANHQKDFLNAHKLFGVSNILKIIRNLDPPQRLIAMKSIVFEANTRANDPVGGCYGIISDLKMQIDWVKAE 107 7******************************************************************************************** PP DUF260 94 lallkee 100 +l+ ++ Thecc1EG037293t1 108 RDLVLHQ 114 9988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.963 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.0E-37 | 15 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MQRPKGNNCS AGSPACAACK YQRRKCTRNC LLAPFFPANH QKDFLNAHKL FGVSNILKII 60 RNLDPPQRLI AMKSIVFEAN TRANDPVGGC YGIISDLKMQ IDWVKAERDL VLHQLAICKA 120 QTAAASQQQS GQQQMVQVGD HEANALQCLE GLTVYDAMPV HCREGEVNLV QGNYDDVGED 180 IKPLLPVFDD KGAGSFPFDS KVSIQCSDKL VSKEEVGSIQ HELKHDLKSA ASLFTLTNGK 240 SR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-26 | 11 | 115 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-26 | 11 | 115 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007012290.2 | 1e-180 | PREDICTED: LOB domain-containing protein 22 isoform X1 | ||||
Swissprot | Q9LRW1 | 5e-42 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A061GRZ6 | 0.0 | A0A061GRZ6_THECC; LOB domain-containing 22-like protein | ||||
STRING | EOY29909 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22116 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-43 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG037293t1 |
Entrez Gene | 18588067 |
Publications ? help Back to Top | |||
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