PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037285t1
Common NameTCM_037285
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 312aa    MW: 33998.3 Da    PI: 9.4443
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037285t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.34.9e-19177210134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Thecc1EG037285t1 177 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 210
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-13171211No hitNo description
PROSITE profilePS5011413.059171207IPR000679Zinc finger, GATA-type
SMARTSM004018.9E-20171223IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-15175211IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.34E-14176208No hitNo description
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
PfamPF003208.0E-17177210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTPVYLNPPP LPFPLVKLKE EQHLQLFLSP QQAATSLSAS TFLNSNTASH QDQTVTKPEE  60
SKPHDHKGNQ FMTHEGSIDQ QASSSSSLQS AVDQSTANGY NLSFSRKEDG DCESASGNGS  120
SVKWMSSKVR LMKKMMNSNC SGADDKPPKF TQRFQYPVHD SDETNSFSKA NNTVRVCSDC  180
NTTTTPLWRS GPRGPKSLCN ACGIRQRKAR RAMEAAAAAA AENGAAAAAD ASSMKIKVHI  240
HKEKKSRTSH VAQCKKQVKP PYYSPQSQKK LCFKEFALSL SKNSALQRVF PQDVEDAAIL  300
LMELSCGLVH S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982034.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A061GJ420.0A0A061GJ42_THECC; GATA type zinc finger transcription factor family protein, putative
STRINGEOY299000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16433713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-31cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]