PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037205t1
Common NameTCM_037205
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 364aa    MW: 39922.3 Da    PI: 6.3189
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037205t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17252286135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Thecc1EG037205t1 252 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 286
                       99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.3E-7713342IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.519246282IPR000679Zinc finger, GATA-type
SMARTSM004014.2E-17246296IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14247283IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.23E-15248310No hitNo description
CDDcd002022.58E-14251298No hitNo description
PfamPF003201.3E-15252286IPR000679Zinc finger, GATA-type
PROSITE patternPS003440252277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEAPEFYQGS SYCSQFAPEK PAAGDHFIVE DLLDFSNEDA VITDGTFDSS VAGGHSTDSS  60
TVTAVDSCNS SSLSGCEPNF EGDMGCRGFT DGQFAGDLCV PYDDLAELEW LSNFVEESFS  120
SEDLQKLQLI SGMKTRPDES SQSGGFQPVI TNQMHHVIEN GDTEHGNNNN NPSFHPDMSV  180
PAKARSKRSR AAPLNWASRL LVLSPTTSSS EPDIVVPVQP PPPNHPGKKP VKTKKKDGGE  240
GGGLANSDGR KCLHCATDKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL  300
TKHSNSHRKV LELRRQKEML RAQHQHQQQF MQHHHHQNMV FDVPNGDDYL IHQHVGPDFR  360
QLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012149.20.0PREDICTED: GATA transcription factor 12
SwissprotP697814e-94GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A061GK480.0A0A061GK48_THECC; GATA transcription factor
STRINGEOY297680.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-79GATA transcription factor 12
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]