PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037098t1
Common NameTCM_037098
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ARR-B
Protein Properties Length: 704aa    MW: 76854.4 Da    PI: 5.9914
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037098t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.76.2e-29208261155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Thecc1EG037098t1 208 KPRVVWSVELHRKFVAAVNQL-GLDKAVPKKILDLMNVEGLTRENVASHLQKYRL 261
                       79*******************.********************************8 PP
2Response_reg82.81e-27261341109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl vdD+p+ +++l+++l+k +y +v+++ ++  al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ +++ + + 
  Thecc1EG037098t1  26 VLAVDDDPICLKVLENLLRKCQY-HVTTTNQAITALKMLRENRnkYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGIT 116
                       799********************.***************999889*******************87754.558******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+ +eel +
  Thecc1EG037098t1 117 HGACDYLLKPVRIEELKN 134
                       ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.8E-1711703IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.1E-4323178No hitNo description
SuperFamilySSF521723.84E-3623147IPR011006CheY-like superfamily
SMARTSM004488.8E-3424136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.07425140IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-2526134IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.30E-2827139No hitNo description
PROSITE profilePS5129412.32205264IPR017930Myb domain
SuperFamilySSF466895.02E-20205265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-30206266IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-25208261IPR006447Myb domain, plants
PfamPF002491.2E-7210260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MAVEEKMGGS NGEDGGKDWF PLGMRVLAVD DDPICLKVLE NLLRKCQYHV TTTNQAITAL  60
KMLRENRNKY DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMKGITHGAC  120
DYLLKPVRIE ELKNIWQHVV RRKKTDSKDQ IKAPNQDKAR AGNGEFGQTS TGSSDQKVNK  180
KRKDQSEDEE EEGEDNGHEN DDPSTQKKPR VVWSVELHRK FVAAVNQLGL DKAVPKKILD  240
LMNVEGLTRE NVASHLQKYR LYLKRLSSVA TQQANMAAAL GSKDPSYLRM SSLDGFGDFR  300
TLTGPGRLSS ASLSSYQPAG MFGRLNSSAA LSLRGISSGV IQQGHSQTLN NSINGLGKIQ  360
PAVLPANQNQ NGTLFQGIPT SIELNQLSQN KSTNHFGEFN RVNDPNVFGV ATNFSDARVP  420
GGSSSNSLST ASGNPLLLQA NTQQTHASGS FGNQSSHGVA SLNQESFDMG VRGSSNFLDH  480
GRCSENWQGA VQLSSFPSSS LSTSEAFNHE QLPPNNLQEN LSWTSSHVSN SPIDLSSSMA  540
NSARLDDSRG DMQCQVGLNN NVIQNMGYTA KQQWGDRRHD YNGNLNNSFS RLDSLISASG  600
AMMDQSNAVT SKRTDVSLFS QLSGDAPYVV QHPEGEKSAF DAKLRSNEDY LFEQTKPQSG  660
FSQNNFESLE DIMSSMIKQG PNNETALMDG EFGFDAYPLG SCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-25204267164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818082e-36LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132562e-36LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007011983.20.0PREDICTED: two-component response regulator ARR18
RefseqXP_017982087.10.0PREDICTED: two-component response regulator ARR18
SwissprotQ6K8X61e-147ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A061GKC80.0A0A061GKC8_THECC; Type-b response regulator, putative
STRINGEOY296020.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-131response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]