PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG037077t1

Common Name

TCM_037077

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 470aa MW: 48868.3 Da PI: 6.5706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037077t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.6e-12	262	307	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Thecc1EG037077t1 262 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 307 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.50E-13	255	311	No hit	No description
SuperFamily	SSF47459	5.76E-17	255	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	257	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	259	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-9	262	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	263	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MQPCSREMQA MNSLLNPTQQ IPLQDLQNNG NSNGHQQIQN PQFDPTSSHD DFLEQMLSTL 60 PSCSWSDLKS PWDPPKADET GGANLDNNVG FHYDEILASK LRQHQINGGG GSSPATAAMK 120 MMMQQQMMLA GRAAAAAAAG GGGGGGGLTM PLSLGSSAAG SHQNDVVDGS SFKSPNHQGG 180 EGSVQALFNS FGAGSLHGTN QSSNQPQHFH HPQGGTMQQA QNFGAPAGTV MNQSQAIGST 240 GGTPAQPKQR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII 300 DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD MPSEGGGDCI QTSANGGSLP RNSNGNQTSS 360 SNDSLTVTEQ QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCHS RNPMINNGNA 420 NNGGNHPLLQ STGEGPSSPS MSVLTVQSAT MGNGVVDGSV KDAASVSKP*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MQPCSREMQA MNSLLNPTQQ IPLQDLQNNG NSNGHQQIQN PQFDPTSSHD DFLEQMLSTL  60
PSCSWSDLKS PWDPPKADET GGANLDNNVG FHYDEILASK LRQHQINGGG GSSPATAAMK  120
MMMQQQMMLA GRAAAAAAAG GGGGGGGLTM PLSLGSSAAG SHQNDVVDGS SFKSPNHQGG  180
EGSVQALFNS FGAGSLHGTN QSSNQPQHFH HPQGGTMQQA QNFGAPAGTV MNQSQAIGST  240
GGTPAQPKQR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII  300
DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD MPSEGGGDCI QTSANGGSLP RNSNGNQTSS  360
SNDSLTVTEQ QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCHS RNPMINNGNA  420
NNGGNHPLLQ STGEGPSSPS MSVLTVQSAT MGNGVVDGSV KDAASVSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	271	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017983805.1	0.0	PREDICTED: transcription factor bHLH66
Swissprot	Q9ZUG9	7e-91	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A061GR23	0.0	A0A061GR23_THECC; LJRHL1-like 1
STRING	EOY29579	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-74	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Thecc1EG037077t1
Entrez Gene	18587863

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]