PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG037077t1 | ||||||||
Common Name | TCM_037077 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 470aa MW: 48868.3 Da PI: 6.5706 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.6e-12 | 262 | 307 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Thecc1EG037077t1 262 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 307 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.50E-13 | 255 | 311 | No hit | No description |
SuperFamily | SSF47459 | 5.76E-17 | 255 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.39 | 257 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 259 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-9 | 262 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 263 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MQPCSREMQA MNSLLNPTQQ IPLQDLQNNG NSNGHQQIQN PQFDPTSSHD DFLEQMLSTL 60 PSCSWSDLKS PWDPPKADET GGANLDNNVG FHYDEILASK LRQHQINGGG GSSPATAAMK 120 MMMQQQMMLA GRAAAAAAAG GGGGGGGLTM PLSLGSSAAG SHQNDVVDGS SFKSPNHQGG 180 EGSVQALFNS FGAGSLHGTN QSSNQPQHFH HPQGGTMQQA QNFGAPAGTV MNQSQAIGST 240 GGTPAQPKQR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII 300 DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD MPSEGGGDCI QTSANGGSLP RNSNGNQTSS 360 SNDSLTVTEQ QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCHS RNPMINNGNA 420 NNGGNHPLLQ STGEGPSSPS MSVLTVQSAT MGNGVVDGSV KDAASVSKP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 266 | 271 | RLRRER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017983805.1 | 0.0 | PREDICTED: transcription factor bHLH66 | ||||
Swissprot | Q9ZUG9 | 7e-91 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A061GR23 | 0.0 | A0A061GR23_THECC; LJRHL1-like 1 | ||||
STRING | EOY29579 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3042 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 5e-74 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG037077t1 |
Entrez Gene | 18587863 |
Publications ? help Back to Top | |||
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