PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG036912t1 | ||||||||
Common Name | TCM_036912 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 256aa MW: 28553.2 Da PI: 8.934 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.7 | 2.7e-29 | 98 | 157 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ k+++ pr+Y+rC++a gCpvkkkv+r+ ed++++ tYeg+Hnh+ Thecc1EG036912t1 98 VKDGFQWRKYGQKVTKDNPSPRAYFRCSMApGCPVKKKVQRCVEDKSFLLATYEGQHNHD 157 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-29 | 92 | 158 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.119 | 93 | 159 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-25 | 95 | 158 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-33 | 98 | 158 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-24 | 99 | 157 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDAPNSNEEK VEALQVELEH LKRANEALRL MLEAMSRKCN TLEAYLRESS SQPTGSRLTR 60 IGSYDEHLNK RPRPEVPSMA KPSQVFVKTD PRDKSLIVKD GFQWRKYGQK VTKDNPSPRA 120 YFRCSMAPGC PVKKKVQRCV EDKSFLLATY EGQHNHDVQS SPMESLSSAE SSAMLSTTSS 180 PYRVLSNSFR PTITLDLTLS GSNVENSRNP RNLVQETSCN DHDNKRIEDY VASLTKDPNF 240 TVALAAAVAR SINGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-21 | 97 | 158 | 13 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 73 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669834 | 3e-70 | KF669834.1 Gossypium hirsutum WRKY transcription factor 70 (WRKY70) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007011726.2 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q6IEK5 | 1e-47 | WRK76_ORYSI; WRKY transcription factor WRKY76 | ||||
TrEMBL | A0A061GHL2 | 0.0 | A0A061GHL2_THECC; Transcription factor, putative | ||||
STRING | EOY29345 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15610 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.2 | 1e-44 | WRKY DNA-binding protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG036912t1 |
Entrez Gene | 18587711 |
Publications ? help Back to Top | |||
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