PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG036843t2 | ||||||||
Common Name | TCM_036843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 214aa MW: 24726.6 Da PI: 10.3659 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.2e-13 | 29 | 85 | 35 | 99 |
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +l++ +r+W+vkl ++++ +++GW+eF+++++L +gD++vF++ g++ f v+vf++ Thecc1EG036843t2 29 RAVLRSCGSRTWSVKL--KGRR----FEDGWEEFARDHDLYVGDVLVFRHGGNMVF--DVMVFDT 85 578899999*******..7777....9**********************9999999..8888875 PP | |||||||
2 | B3 | 61.4 | 1.5e-19 | 132 | 213 | 4 | 86 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +++++++lk + l +p+kfa+++g+ + +++l d++grsW +l+++k++g++++++GW++ + an+Lke D+v+++l+g Thecc1EG036843t2 132 ATLKPNNLKVSKLNIPRKFARSNGLTDRF-CEMVLVDQQGRSWIANLRHKKSDGQVYIGRGWRNLCIANNLKEEDSVLLELIG 213 444777888888***********999765.5*************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.561 | 1 | 86 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.67E-15 | 10 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.31E-13 | 11 | 84 | No hit | No description |
SMART | SM01019 | 1.5E-8 | 13 | 86 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-15 | 24 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.4E-9 | 28 | 83 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-23 | 122 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-20 | 125 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.29E-20 | 128 | 213 | No hit | No description |
PROSITE profile | PS50863 | 14.113 | 129 | 214 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-15 | 130 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-18 | 131 | 213 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSNAKFTPIM PHFLKPLLPG FHKQLNCERA VLRSCGSRTW SVKLKGRRFE DGWEEFARDH 60 DLYVGDVLVF RHGGNMVFDV MVFDTRSACQ REYPLFAMKG KDQKKSSAKR FGKQLEKCTS 120 TSFKHEHPYF VATLKPNNLK VSKLNIPRKF ARSNGLTDRF CEMVLVDQQG RSWIANLRHK 180 KSDGQVYIGR GWRNLCIANN LKEEDSVLLE LIGN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017983529.1 | 1e-157 | PREDICTED: B3 domain-containing protein REM8 isoform X2 | ||||
TrEMBL | A0A061GHD1 | 1e-159 | A0A061GHD1_THECC; DNA binding protein, putative isoform 2 (Fragment) | ||||
STRING | EOY29249 | 1e-148 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 7e-40 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG036843t2 |
Entrez Gene | 18587648 |
Publications ? help Back to Top | |||
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