PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036784t1
Common NameTCM_036784
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 314aa    MW: 34747.3 Da    PI: 5.1309
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036784t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.41.8e-14147199456
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                       lkr rrk +NRe+ArrsR+RK++ ++ Le  +++L +eN++L k+l +  ++ 
  Thecc1EG036784t1 147 LKRLRRKLSNRESARRSRKRKQEHLADLELQAEQLRGENDSLYKQLTNAHQQF 199
                       8******************************************8888776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-13144208IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.1E-11145199No hitNo description
PfamPF001701.7E-11146197IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.082146209IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.66E-11147198No hitNo description
CDDcd147023.48E-19149200No hitNo description
PROSITE patternPS000360151166IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MHELVEEMMK QSASELALEE FIRKTMTFSD AKPFPDFDPD TWVAHLSNSF DVFKDHLLHQ  60
EGEAETHVLL LQNLTPNQSS VTATLDSQSS ICENLSSGSP LSGNNPKIRE NEVRGATSGS  120
SHEQSDDEED IETDPGQCEQ SLDPTHLKRL RRKLSNRESA RRSRKRKQEH LADLELQAEQ  180
LRGENDSLYK QLTNAHQQFR DADTNNRVLK SDVEALRAKV KLEEDRLARR TLTCNLNLLQ  240
SHLTSPQPIA THNLRMVANV SPTITVHGED SSYAGLTVSG NSALGLGNVD ISNGNLNSGI  300
GSDAVSGVSE IWR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146153LKRLRRKL
2150166RRKLSNRESARRSRKRK
3160166RRSRKRK
4160167RRSRKRKQ
5162167SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9641837e-38JX964183.1 Gossypium hirsutum clone NBRI_TRANS-452 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007011531.20.0PREDICTED: basic leucine zipper 9 isoform X1
SwissprotQ9FUD36e-77BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A061GH410.0A0A061GH41_THECC; Basic leucine zipper 9, putative isoform 1
STRINGEOY291500.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-71basic leucine zipper 9
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]