PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG036707t1

Common Name

TCM_036707

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 458aa MW: 52208.6 Da PI: 6.7327

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG036707t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	312.3	1.1e-95	77	455	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lLl A+ v++++ + a + L++l + +s gd++qR++ayf+ +Laarl+ + s y+ + ++t+ +e++ a++ ++ vsP+++f Thecc1EG036707t1 77 LIHLLLITATSVDENNVNSALENLTELYQSVSLIGDSVQRVVAYFADGLAARLLTQKSPFYDMVMKEPTN----EEQFLAFTCLYRVSPYYQF 165 689**************************************************999999988877776....678889999****** PP GRAS 94 shltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfef 178 +h+taNqaI ea+e+e +++H+iDfd+ +G+QWp+L+q+L++++ ++ slR+Tg g+ s+eel+et+ rL +fA + ++ fef Thecc1EG036707t1 166 AHFTANQAIIEAFEKEdeinnRALHVIDFDVCYGFQWPSLIQSLSEKAssGNRISLRLTGYGR----SSEELQETETRLVSFAGGCrNLVFEF 254 ************55554555******************99745556*****....9***********87648* PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 + l l +l +Lr k++E+++Vnlv++l +l + +++++ +Lk v sl+P +v++veqe +++ sFl rf+e+l+y++a+fdsl Thecc1EG036707t1 255 QGL----LRGSKLVNLRKKKNETVVVNLVFHLNTLN-NFLKISD----TLKSVHSLRPSIVILVEQEGSRSPRSFLSRFMESLHYFAAMFDSL 338 8....66667789***************9996.5566655....***************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvk..sdgyrve 352 + lp es er ++E+ lg+ei++++ c ++e ++ r ++e+W+ r+e+ GF+ +++s+k qaklll+ +++ s g+rv Thecc1EG036707t1 339 DDCLPLESAERLSIEKNHLGKEIKSIINCDKDEdnKFPRYAKMETWKGRMESHGFEGMKMSSKSLIQAKLLLKirthycplQCEgeSGGFRVF 431 *************************998866889*****************************9744333333333334568887 PP GRAS 353 ee..sgslvlgWkdrpLvsvSaWr 374 e+ +sl lgW+dr L+++SaW+ Thecc1EG036707t1 432 ERddGKSLSLGWQDRCLLTASAWQ 455 653356777************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	48.484	51	423	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-93	77	455	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MEDTDEDELL NLSLSIVTDP GGERNRKRKT KDISKPFNPS YEGCEGKIFR LLQVREEMLK 60 VDHKRKKMVE DGKGLHLIHL LLITATSVDE NNVNSALENL TELYQSVSLI GDSVQRVVAY 120 FADGLAARLL TQKSPFYDMV MKEPTNEEQF LAFTCLYRVS PYYQFAHFTA NQAIIEAFEK 180 EDEINNRALH VIDFDVCYGF QWPSLIQSLS EKASSGNRIS LRLTGYGRSS EELQETETRL 240 VSFAGGCRNL VFEFQGLLRG SKLVNLRKKK NETVVVNLVF HLNTLNNFLK ISDTLKSVHS 300 LRPSIVILVE QEGSRSPRSF LSRFMESLHY FAAMFDSLDD CLPLESAERL SIEKNHLGKE 360 IKSIINCDKD EDNKFPRYAK METWKGRMES HGFEGMKMSS KSLIQAKLLL KIRTHYCPLQ 420 CEGESGGFRV FERDDGKSLS LGWQDRCLLT ASAWQCV*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MEDTDEDELL NLSLSIVTDP GGERNRKRKT KDISKPFNPS YEGCEGKIFR LLQVREEMLK  60
VDHKRKKMVE DGKGLHLIHL LLITATSVDE NNVNSALENL TELYQSVSLI GDSVQRVVAY  120
FADGLAARLL TQKSPFYDMV MKEPTNEEQF LAFTCLYRVS PYYQFAHFTA NQAIIEAFEK  180
EDEINNRALH VIDFDVCYGF QWPSLIQSLS EKASSGNRIS LRLTGYGRSS EELQETETRL  240
VSFAGGCRNL VFEFQGLLRG SKLVNLRKKK NETVVVNLVF HLNTLNNFLK ISDTLKSVHS  300
LRPSIVILVE QEGSRSPRSF LSRFMESLHY FAAMFDSLDD CLPLESAERL SIEKNHLGKE  360
IKSIINCDKD EDNKFPRYAK METWKGRMES HGFEGMKMSS KSLIQAKLLL KIRTHYCPLQ  420
CEGESGGFRV FERDDGKSLS LGWQDRCLLT ASAWQCV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-58	66	454	8	378	Protein SCARECROW
5b3h_A	3e-58	66	454	7	377	Protein SCARECROW
5b3h_D	3e-58	66	454	7	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017980934.1	0.0	PREDICTED: protein SCARECROW
TrEMBL	A0A061FLD0	0.0	A0A061FLD0_THECC; GRAS family transcription factor
STRING	EOY17497	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15761	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	8e-59	GRAS family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG036707t1
Entrez Gene	18593143

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]