PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036616t1
Common NameTCM_036616
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 141aa    MW: 15950.6 Da    PI: 4.935
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036616t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-162063148
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaia 48
                      s y GVr+++ +gr++AeIr p     +   r++lg+f+taeeAa a++ 
  Thecc1EG036616t1 20 SWYLGVRRRP-WGRYAAEIRNP-----HtkERHWLGTFDTAEEAAIAYDL 63
                      6799******.**********7.....336******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-102063IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-182079IPR016177DNA-binding domain
PROSITE profilePS5103220.2312179IPR001471AP2/ERF domain
SMARTSM003805.5E-242185IPR001471AP2/ERF domain
CDDcd000181.47E-232278No hitNo description
PRINTSPR003675.3E-92233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-252278IPR001471AP2/ERF domain
PRINTSPR003675.3E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MENFPSLAYR NPKRSSRRSS WYLGVRRRPW GRYAAEIRNP HTKERHWLGT FDTAEEAAIA  60
YDLSSISFSG IDRARTNFYY PFLVLPSPPP STPPPPPPTP ELEGDDDDQE MNNVNEDDES  120
VVIASILQSF AHSANCSFYP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1522701564Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007020218.11e-100PREDICTED: ethylene-responsive transcription factor LEP
TrEMBLA0A061FKK12e-98A0A061FKK1_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY174434e-99(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.13e-28ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]