PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036484t4
Common NameTCM_036484
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 226aa    MW: 24148.7 Da    PI: 6.0258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036484t4genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.2e-06197222630
                       HHHHHHHHHHHHHHHHHHHCTSCC.C CS
               HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                       +++Er RR ri +++ +L+el+P+ +
  Thecc1EG036484t4 197 SIAERVRRTRISDRIRKLQELVPNmD 222
                       689********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.661191225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-6194223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-4195224No hitNo description
Gene3DG3DSA:4.10.280.103.1E-5196223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MQPTPGGSGS SSGGGGGGGE LSRGGLARFR SAPATWLEAL LEEEEEDPLK PNQCLTQLLT  60
ANSTTPATRD SGPFSSSADP AGLFEPTGFQ RQNSSPADFL GNNSGAASDA YFSNFGIPAN  120
YDYLSPNIDA SPSSKRAREL DTQYPPTKFQ SQLKGEQRGQ ISSGVSNLID VDMEKLLEDS  180
VPCRVRAKRG CATHPRSIAE RVRRTRISDR IRKLQELVPN MDKAQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007020096.21e-162PREDICTED: transcription factor bHLH80 isoform X1
RefseqXP_007020097.21e-163PREDICTED: transcription factor bHLH80 isoform X3
RefseqXP_017981759.11e-163PREDICTED: transcription factor bHLH80 isoform X4
SwissprotQ9C8P82e-78BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A061FS231e-163A0A061FS23_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 4
STRINGEOY173211e-162(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.17e-67bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]