PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG036484t3 | ||||||||
Common Name | TCM_036484 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 280aa MW: 30132.7 Da PI: 5.9059 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.3 | 5e-07 | 197 | 227 | 6 | 38 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-S CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKl 38 +++Er RR ri +++ +L+el+P+ + + +K+ Thecc1EG036484t3 197 SIAERVRRTRISDRIRKLQELVPNmD---KITKM 227 689********************977...66664 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.626 | 191 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-7 | 194 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.12E-6 | 195 | 228 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.5E-6 | 196 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 280 aa Download sequence Send to blast |
MQPTPGGSGS SSGGGGGGGE LSRGGLARFR SAPATWLEAL LEEEEEDPLK PNQCLTQLLT 60 ANSTTPATRD SGPFSSSADP AGLFEPTGFQ RQNSSPADFL GNNSGAASDA YFSNFGIPAN 120 YDYLSPNIDA SPSSKRAREL DTQYPPTKFQ SQLKGEQRGQ ISSGVSNLID VDMEKLLEDS 180 VPCRVRAKRG CATHPRSIAE RVRRTRISDR IRKLQELVPN MDKITKMESF SLAPMENFSC 240 KSPDFKGHMR VGTTLIWLLS LLNSVEYGTE QGPVVVVIV* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007020098.2 | 0.0 | PREDICTED: transcription factor bHLH80 isoform X2 | ||||
Swissprot | Q9C8P8 | 2e-77 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A061FK96 | 0.0 | A0A061FK96_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 3 | ||||
STRING | EOY17321 | 1e-176 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G35460.1 | 8e-66 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG036484t3 |
Entrez Gene | 18593029 |
Publications ? help Back to Top | |||
---|---|---|---|
|