PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG036484t2 | ||||||||
Common Name | TCM_036484 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 28504.6 Da PI: 5.927 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.8e-13 | 197 | 242 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveY+k+Lq Thecc1EG036484t2 197 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKYLQ 242 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.843 | 191 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-16 | 194 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.13E-12 | 195 | 246 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 196 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-10 | 197 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-13 | 197 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MQPTPGGSGS SSGGGGGGGE LSRGGLARFR SAPATWLEAL LEEEEEDPLK PNQCLTQLLT 60 ANSTTPATRD SGPFSSSADP AGLFEPTGFQ RQNSSPADFL GNNSGAASDA YFSNFGIPAN 120 YDYLSPNIDA SPSSKRAREL DTQYPPTKFQ SQLKGEQRGQ ISSGVSNLID VDMEKLLEDS 180 VPCRVRAKRG CATHPRSIAE RVRRTRISDR IRKLQELVPN MDKQTNTADM LDEAVEYVKY 240 LQKQIEELTE HQRKCKCKTK E* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007020097.2 | 0.0 | PREDICTED: transcription factor bHLH80 isoform X3 | ||||
Swissprot | Q9C8P8 | 1e-102 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A061FKW9 | 0.0 | A0A061FKW9_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2 | ||||
STRING | EOY17321 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 4e-91 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG036484t2 |
Entrez Gene | 18593029 |
Publications ? help Back to Top | |||
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