PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036484t1
Common NameTCM_036484
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 303aa    MW: 32844.8 Da    PI: 5.0707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036484t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-13197242655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+     +k  + a++L +AveY+k+Lq
  Thecc1EG036484t1 197 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKYLQ 242
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.843191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16194257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.36E-13195246No hitNo description
Gene3DG3DSA:4.10.280.105.2E-16196252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-12197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MQPTPGGSGS SSGGGGGGGE LSRGGLARFR SAPATWLEAL LEEEEEDPLK PNQCLTQLLT  60
ANSTTPATRD SGPFSSSADP AGLFEPTGFQ RQNSSPADFL GNNSGAASDA YFSNFGIPAN  120
YDYLSPNIDA SPSSKRAREL DTQYPPTKFQ SQLKGEQRGQ ISSGVSNLID VDMEKLLEDS  180
VPCRVRAKRG CATHPRSIAE RVRRTRISDR IRKLQELVPN MDKQTNTADM LDEAVEYVKY  240
LQKQIEITKM ESFSLAPMEN FSCKSPDFKG HMRVGTTLIW LLSLLNSVEY GTEQGPVVVV  300
IV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007020096.20.0PREDICTED: transcription factor bHLH80 isoform X1
SwissprotQ9C8P85e-92BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A061FJR80.0A0A061FJR8_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
STRINGEOY173210.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-80bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]