PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036409t2
Common NameTCM_036409
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 289aa    MW: 33213.9 Da    PI: 8.6612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036409t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-051640123
                      EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                      ++C+  dC+  ++rk++L+rH+ +H
  Thecc1EG036409t2 16 FVCSvdDCHANYRRKDHLNRHLLRH 40
                      89*********************99 PP
2zf-C2H216.32.7e-054570123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                      +kCp  +C++ F  + n+krH +  H
  Thecc1EG036409t2 45 FKCPieNCNREFAFQGNMKRHVKEfH 70
                      89********************9988 PP
3zf-C2H2171.7e-0586110123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++C+   Cgk+F+  s L++H   H
  Thecc1EG036409t2  86 HVCQevGCGKVFKFASKLRKHEDAH 110
                       789999***************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-91342IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.78E-61342No hitNo description
PROSITE profilePS501579.2861645IPR007087Zinc finger, C2H2
SMARTSM003550.031640IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801840IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-64367IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.35E-64371No hitNo description
PROSITE profilePS5015711.1984575IPR007087Zinc finger, C2H2
SMARTSM003550.00774570IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804770IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-782110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.09786115IPR007087Zinc finger, C2H2
SMARTSM003550.0786110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088110IPR007087Zinc finger, C2H2
SMARTSM0035510118143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120143IPR007087Zinc finger, C2H2
SMARTSM0035516146167IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-6157198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.09E-8158213No hitNo description
PROSITE profilePS5015711.593176206IPR007087Zinc finger, C2H2
SMARTSM003550.0052176201IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178201IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-5200229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.3207233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280209233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MLVASNTFFF LLQRPFVCSV DDCHANYRRK DHLNRHLLRH KGKLFKCPIE NCNREFAFQG  60
NMKRHVKEFH DDEDSSSPGL GSQKQHVCQE VGCGKVFKFA SKLRKHEDAH VKLDSVEAFC  120
SEPSCMKYFT NEQCLRAHVQ SCHQYISCEI CGTKQLKKNI KRHLRSHEPG DVSERIKCDF  180
EGCCHTFSTK SNLRQHVKAV HEELKPFACS FSGCGMRFSY KHVRDNHEKS GCHIYVPGDF  240
VESDEHFLSR PRGGRKRTFP SVEMLIRKRV SPPQMDTMTD LGPNLGCS*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007020041.20.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-121TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A061FKS50.0A0A061FKS5_THECC; Transcription factor IIIA isoform 2
STRINGEOY172660.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-124transcription factor IIIA
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]