PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036247t1
Common NameTCM_036247
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 278aa    MW: 31624 Da    PI: 4.329
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036247t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.61.6e-1245124183
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                       +ppG+rF Ptd++l+ ++L +kv++++l+  ev+++++iy +   ePw++  ++ ++ ++ y F++ ++k + g+ +n +  +g W
  Thecc1EG036247t1  45 VPPGYRFAPTDDQLILHFLSNKVKEEPLPS-EVFTDCEIYGHqdkEPWKIF-SM-TSPRKFYVFTNLKNKVK-GDGANNV--NGHW 124
                       69*************************999.99****999876669****6.44.45689999999988765.4444443..4555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-1642145IPR003441NAC domain
PROSITE profilePS510059.67645196IPR003441NAC domain
PfamPF023655.1E-846129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MATHLQLQPD HSLHQSTMTE LLLSPTHDDL DHEYLYFDHS TSTWVPPGYR FAPTDDQLIL  60
HFLSNKVKEE PLPSEVFTDC EIYGHQDKEP WKIFSMTSPR KFYVFTNLKN KVKGDGANNV  120
NGHWLMDEYS LLTQSDYAFC AIRNKNATKS IAEEVGYDHV EGIEAMLEEL EDCIGQVQTL  180
MSEQVQATNT CINSQHTKRG LETEQDETQQ KRMRFNNSAQ DKQTCFTGAA IPVSTLASDK  240
SLGEEGMTAE KFEQEWVLEG FEDQNLDELL EATNAQE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981013.11e-161PREDICTED: NAC domain-containing protein 13
TrEMBLA0A061FRC60.0A0A061FRC6_THECC; Uncharacterized protein
STRINGEOY170840.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-10NAC domain containing protein 47
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]