PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036236t1
Common NameTCM_036236
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 355aa    MW: 40523 Da    PI: 4.5242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036236t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.32.4e-26381641128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppG+rF Ptd++l+ +yL +kv+g++l+  e++++++iy     ePw++   + ++ ++ y F+k ++k  +gkr +r++ +g+Wk + +  
  Thecc1EG036236t1  38 VPPGYRFAPTDDQLILHYLSNKVRGQPLPS-EAVTDCEIYGDqdkEPWRIF-DM-TSPRKFYVFTKLKNK-GKGKRIERTAGRGTWKGQRT-D 125
                       69**************************99.889***999643349****6.44.346788999998776.68**************8866.7 PP

               NAM  91 evlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                       +v++++g+++g kk +vf  kg   + ++ +W+mhey+l
  Thecc1EG036236t1 126 PVKDSDGNHIGFKKLFVFEvKGGGANNVNGHWLMHEYSL 164
                       89999*************9788888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-3034178IPR003441NAC domain
PROSITE profilePS5100528.02338195IPR003441NAC domain
PfamPF023658.1E-1939164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTTQLQLDRS FHQSTMPELL LSPTHDYLYF DHSTFTWVPP GYRFAPTDDQ LILHYLSNKV  60
RGQPLPSEAV TDCEIYGDQD KEPWRIFDMT SPRKFYVFTK LKNKGKGKRI ERTAGRGTWK  120
GQRTDPVKDS DGNHIGFKKL FVFEVKGGGA NNVNGHWLMH EYSLLTQSDY VLCAIRNKNA  180
TESTAEEVGC DHVEGIEAMM EELEECIGQD QTLMSEQDQA TNTCINNQHT NTQELIKRGL  240
ETEEDETQQK RMRFNKSVQD KKTCFEGAAI PVSTLASDKS QGEEGMTAEK LEQEWILEGF  300
EDQNLDELLE ATSAQEYQQQ EEMMRFSDNC VKEDMYKQHS FTAAAEPALG FDSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-203817815168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019853.10.0PREDICTED: NAC transcription factor 25
TrEMBLA0A061FJI90.0A0A061FJI9_THECC; Uncharacterized protein
STRINGEOY170780.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-22NAC domain containing protein 47
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]