PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036197t1
Common NameTCM_036197
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 384aa    MW: 43214 Da    PI: 4.6039
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036197t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.41.1e-26431691128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppG+rF Ptd++l+ +yL +k++g++l+  e++++++iy     ePw++   + +++++ y F+k ++k  +gkr +r++ +g+Wk + +  
  Thecc1EG036197t1  43 VPPGYRFAPTDDQLILHYLSNKIKGEPLPS-EAVTDCEIYGDqdkEPWRIF-GM-TSSRKFYVFTKLKNK-GKGKRIERTAGRGTWKGQRT-D 130
                       69**************************99.889***999643349****6.44.346789999998776.68**************8866.7 PP

               NAM  91 evlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                       +v++++g+++g kk +vf  kg   + ++ +W+mhey+l
  Thecc1EG036197t1 131 PVKDSDGNQIGFKKLFVFEvKGGGANNVNGHWLMHEYSL 169
                       89999*************9788888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-3039183IPR003441NAC domain
PROSITE profilePS5100528.29343183IPR003441NAC domain
PfamPF023651.1E-1844169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MATDQLQLDH SFHQSTMTEL LPSPTHDHLI HYLYFDHSTS TWVPPGYRFA PTDDQLILHY  60
LSNKIKGEPL PSEAVTDCEI YGDQDKEPWR IFGMTSSRKF YVFTKLKNKG KGKRIERTAG  120
RGTWKGQRTD PVKDSDGNQI GFKKLFVFEV KGGGANNVNG HWLMHEYSLL TQSDYVLCAI  180
RNKNAAEPTA EEVGLDHVEG MEAMIEELEQ CIGQDQTLMS EQVQATNTCI NNQHTRRGLE  240
TEEDETQPKR MRFSNSVQGK QTCFTGAATP VSTLALDKAS GDQEGMTAEK LEQEWVLKGF  300
EDQNLDELLE ATNAQECQQQ EEMMRFSENY VTGDMYMQHS FTAAAEPALG FDSEFSYYNP  360
QPYTLLDHCP PSLPDGSMGN SSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-204318415169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981013.10.0PREDICTED: NAC domain-containing protein 13
TrEMBLA0A061FIX90.0A0A061FIX9_THECC; Uncharacterized protein
STRINGEOY170360.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.12e-23NAC domain containing protein 52
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]