PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036193t1
Common NameTCM_036193
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 359aa    MW: 40727 Da    PI: 4.5609
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036193t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.32.4e-26181441128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppG+rF Ptd++l+ +yL +kv+g++l   e++++++iy     ePw++   v+ + +  y F+k ++k  +gkr +r++ +g+Wk + +  
  Thecc1EG036193t1  18 VPPGYRFAPTDDQLILHYLSNKVKGQPLLS-EAVTDCEIYGDqdkEPWNIF-DVT-SPRTFYVFTKLKNK-GKGKRIERTAGRGTWKGQRT-D 105
                       69*************************877.789999999643349****6.443.45677888887765.68**************8866.7 PP

               NAM  91 evlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                       +v++++g+++glkk +vf  kg+  + ++ +W+mhey+l
  Thecc1EG036193t1 106 PVKDSDGNHIGLKKLFVFEvKGDGANNVNGHWLMHEYSL 144
                       89999*************978999999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-2912158IPR003441NAC domain
PROSITE profilePS5100528.23918158IPR003441NAC domain
PfamPF023656.3E-1919144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MPDHLHYHYF DHSTSTWVPP GYRFAPTDDQ LILHYLSNKV KGQPLLSEAV TDCEIYGDQD  60
KEPWNIFDVT SPRTFYVFTK LKNKGKGKRI ERTAGRGTWK GQRTDPVKDS DGNHIGLKKL  120
FVFEVKGDGA NNVNGHWLMH EYSLLTQSDY VLCAIRNKNA NESTAEEVGL DHVEGIEAMI  180
EEPEQCIGQD QTLMSKQVQA TNTCINNQHT KRGLETEEDE TQQKRMRFGN SVQDKQTCFA  240
GAATPVSTLA SDKSLGDQEG MTAEKLEQEW ALEGFEDQNL DELLEATNAQ EYPQQEEMMR  300
FSDYCVMEDM YKQHSFTAAA EPALGIDSEF YYSNPQPYTL HDHCPHSLPD NSMGNWSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-201815915169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019807.20.0PREDICTED: NAC transcription factor 29
TrEMBLA0A061FK220.0A0A061FK22_THECC; Uncharacterized protein
STRINGEOY170320.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.12e-24NAC domain containing protein 52
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]