PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG036034t1 | ||||||||
Common Name | TCM_036034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 419aa MW: 47645.8 Da PI: 8.9338 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.6 | 2.4e-53 | 61 | 190 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk Thecc1EG036034t1 61 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRDK 152 69****************************.99**************963433332556********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + + +++g++ktLvfy+grap+g+ktdW+mheyrle Thecc1EG036034t1 153 CIRN-TYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 190 ***9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-59 | 59 | 219 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.154 | 61 | 219 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-28 | 62 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MRDSLMHRSL ISKFDKLIPK TQGEECNAIK VKPLKSYPHV QSGAVATASP VVVMGSSNGG 60 VPPGFRFHPT DEELLHYYLK KKVSFQKFDM EVIREVDLNK MEPWDLQERC RIGSTPQNEW 120 YFFSHKDRKY PTGSRTNRAT SAGFWKATGR DKCIRNTYRK IGMRKTLVFY RGRAPHGQKT 180 DWIMHEYRLE DGDDPQGNTS VSIQINIEDG WVVCRVFKKK NLFKVGNNGG SSINSSDQQL 240 NTSSSSQPRS FMHRSSDQYL VRHQHHNFEL NKAELARHYP HMQTPQYSLF QPQTLVQPHK 300 PLNYEFAAAP AALPPDPPVM IKQLMSRDCE SGSESLRYQA CEPGLEVGTC EPSQPMGVPG 360 RDEGMNEWSM LDRLVSASHM GHEDSSKGVR FEETNATAVH PMNQLSLRGE MDFWGYGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-51 | 61 | 221 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017981144.1 | 0.0 | PREDICTED: protein BEARSKIN2 | ||||
Swissprot | Q9SV87 | 1e-157 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A061FQY9 | 0.0 | A0A061FQY9_THECC; NAC domain protein, IPR003441 | ||||
STRING | EOY16954 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5213 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-148 | NAC domain containing protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG036034t1 |
Entrez Gene | 18592780 |
Publications ? help Back to Top | |||
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