PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG035897t1 | ||||||||
Common Name | TCM_035897 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 232aa MW: 26061.7 Da PI: 6.278 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 139 | 197 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K vk++++pr+YYrC++agC+vkk+ver++edp++v++tYeg+H+he Thecc1EG035897t1 139 MDDGYKWRKYGKKRVKNNPNPRNYYRCSTAGCKVKKRVERDKEDPRFVITTYEGKHHHE 197 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-33 | 128 | 199 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-27 | 132 | 199 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.489 | 134 | 199 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-33 | 139 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-24 | 140 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MSNSNITTFL AAAAAAVNIP QQTSSPIYSH AVMDDNSTDQ LDFDEDFLIL AADAGEGTNF 60 ETNAPSSSCL KASTTLSQSP FLSSDEMTSS SVNGCWEVPR SSFVDYMQQN GEGYVKTMEM 120 DDHVGFKIAF RTKSDLEIMD DGYKWRKYGK KRVKNNPNPR NYYRCSTAGC KVKKRVERDK 180 EDPRFVITTY EGKHHHESPS ADTDICHNAI NPDQRTSHQL QFLHHHQQHQ P* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 129 | 200 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 129 | 200 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF669804 | 2e-68 | KF669804.1 Gossypium hirsutum WRKY transcription factor 113 (WRKY113) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007019683.1 | 1e-177 | PREDICTED: probable WRKY transcription factor 51 isoform X1 | ||||
TrEMBL | A0A061FJ19 | 1e-176 | A0A061FJ19_THECC; WRKY DNA-binding 50-like protein | ||||
STRING | EOY16908 | 1e-177 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22097 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64810.1 | 2e-28 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG035897t1 |
Entrez Gene | 18592752 |
Publications ? help Back to Top | |||
---|---|---|---|
|