PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG035623t1

Common Name

TCM_035623

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 310aa MW: 33676.8 Da PI: 8.9731

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG035623t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.1	1.1e-14	227	287	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 + +r+rr++kNRe+A rsR+RK+a++ eLe + +Le+eN++L k+++e+ k+ ++l + Thecc1EG035623t1 227 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENEQLlKEKAERTKERFKQLMEK 287 679**************************************97256788888888887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.7E-12	223	285	No hit	No description
SMART	SM00338	3.4E-10	225	289	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.864	227	279	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.3E-13	227	287	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.42E-17	229	275	No hit	No description
SuperFamily	SSF57959	3.16E-9	229	280	No hit	No description
PROSITE pattern	PS00036	0	232	247	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MASSKVMPTS NSRNSDLSRR SASSSSSTKP QSFSDQSNIN NSNTNRLSST MTVDGILRNV 60 YSAAPTTETT LVDASITLID TPTPTTAGGN SEVSQGQTVA DCSNNVAKSV DEVWREIVSG 120 ERKEITMKEE APDEMMTLED FLAKAGAVED AAAAATAEVK VQQDRMSGGV YAYDPVGGSP 180 FQMLDKMEGS IVGLNGMEVI GSGGGAGGGG RGKRGRGVLM EPLDKAAQQR QRRMIKNRES 240 AARSRERKQA YQVELESLAV KLEEENEQLL KEKAERTKER FKQLMEKVVP VVEQRRPPRV 300 LRRVRSLQW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8146148}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007019519.1	0.0	PREDICTED: G-box-binding factor 4
Swissprot	P42777	3e-65	GBF4_ARATH; G-box-binding factor 4
TrEMBL	A0A061FQF9	0.0	A0A061FQF9_THECC; Basic-leucine zipper transcription factor family protein, putative
STRING	EOY16744	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3852	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	2e-49	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG035623t1
Entrez Gene	18592635

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]