PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG035473t1

Common Name

TCM_035473

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 306aa MW: 34381.2 Da PI: 4.7399

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG035473t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.3	2.8e-37	30	84	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ Thecc1EG035473t1 30 PNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRR 84 58**************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	13	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-32	30	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MFTVCDQMLQ CPPRPLPIDR KWKSNVELAP NCPRCASANT KFCYYNNYSL SQPRYFCKGC 60 RRYWTKGGSL RNVPVGGGCR KSRRGKFSRA EKSGHLSMNY RKNLSSFGSH QDEMIGVSSS 120 PDGDSGNRPE PASGSDIDLA VVFAKFLNQS TNFDHPEVVT QELPNEANER IDVWSYLEQD 180 INSQNGSSME SQKPVVPSIP ESFMLQETPQ VNQQQEENKS IEELLETNHM NAFGLPNLLA 240 DETVQDALWS DDAASTTPNF DWQPVLQLQQ FESFPVDDQL RISANLVIEN WNSFDLSGFG 300 LFSKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007019428.2	0.0	PREDICTED: dof zinc finger protein DOF1.2
TrEMBL	A0A061FIG5	0.0	A0A061FIG5_THECC; F-box family protein, putative
STRING	EOY16653	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6462	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	8e-44	Dof family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG035473t1
Entrez Gene	18592558

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]