PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG035217t1

Common Name

TCM_035217

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 2111aa MW: 232535 Da PI: 9.2214

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG035217t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.7e-06	1987	2008	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tG C+ G++Ck +H++ Thecc1EG035217t1 1987 CPNFEATGSCPQGSKCKLHHPK 2008 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.159	1878	1906	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.015	1879	1905	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.8	1906	1930	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.869	1910	1931	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.6E-4	1932	1957	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.493	1932	1958	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.69	1959	1980	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1	1959	1985	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.361	1981	2009	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.2	1986	2008	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043484	Biological Process	regulation of RNA splicing
GO:0060149	Biological Process	negative regulation of posttranscriptional gene silencing
GO:0016607	Cellular Component	nuclear speck
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2111 aa Download sequence Send to blast
MDPSSYVNHH HHHHHQQNNH TRYAPLSPPL HLLSPTPPLP PHAPPYQQSP NNLYPSRYHV 60 PPPQPPPQLA PPPPPPQQPQ QQPYHPLPAP PPSVQRQQHP NHHPYNPQHP QYTFNPNFNS 120 NPKPNNVSHQ FHDFPQRRVP EFDTRPEYWP DNRASRPHSV SSLDREARYH QFDRRPASLA 180 VDRYRHDVEG SSRYRALELN LRERPELGRV HSDNWIPDRA SRDFGIVSMG FESNSNNSGF 240 CHKVAENVRW GSRLRDQLID NGNNEINERD EMRVFSRKID YYQESELERF SDRGSSREDS 300 HEFNRAPRKQ IQKKSALLRI QKAQQNHRNR EDERSHYMGY NNEGKTGSFR GKDLVLHSDH 360 GLEERERKVS PVELDVSFKS NSLVAKAIVT PSSSSPVSDL NVKPRTSKIR KVMIFDKANE 420 SRAKLDVSTS VLNSGSGSED SKQSAGKVKS CGIGNVHDGV TKPSSKRTNV SLRNGKFERS 480 CKVTVKLDDL TCVTEETPIT DKKPESLEGK STIPCIGNMR DGGLQTCSDR ANVSVRENKV 540 EGTLKSTLSD KSGASVGKPS SLKATKKKKI VRKVEKKVTN SPLNLANSKS PKSCDQPVKA 600 DTSTYCLSAI SVADKSVTPP KMKIASAAGC SAGAVGLECC PKESALLLEY EKVTGASKDV 660 VSKEVGTDVD PGSSVAPKIK RKRNSSTLPL RSSGHEESKV DQRFVNSDNS VFGLRIVSNI 720 KEDRTETLNE SITSRAFSVE DIDKQFYHSE SNNDGLLRSE DINVHEDIVD IGSSSVAMHG 780 TPGFECGSSN TQEINIACDI GNVNSGSKQA CATAGNPVVE DGTTGRLPEA NCSAGSNKMP 840 HLPCSEETQI NSGSIYADCS NHNRSTIHTP DIGYVNSGES NCEIGDDFVK HLVSSTLSLG 900 NSGAERIPNA AESPECTAGS ADVLTSANCL DTTIITSGVS APPEVMVSDF GWLDTFREVS 960 ASADGKSPEN KKRKISTSSS DVTASVINEG VAVSNISKSA VQLPSNFTDD QLQLEQAVKV 1020 SSIDGLHKEG IDLLLVNSSV VGPSQSVGFF RDAYKINHPR IDPCSAFIES VAPSSPCLHL 1080 LKLGGDQLST ATQVSAQNNH QIVAMDIEGD DRGKVHVGTA EEQKFISSEV SQCRITPEHM 1140 SSSLDQRLPS TDVEDDNHIP LKDDLPSALI SLVFGVDANE VSATNSNDEV MPAPDIVSDV 1200 GSPYNHDNFV ISASTCKAPL CQQSEKQAFG DEKFSDDKPM AEGAGNVSAL VSYSQHSRTI 1260 LKSNDAIQTN QSVAGKEVLL PSHDSKNTNS PNSISGATRR RKNPLSHVVP KSYPTRSSFV 1320 FSASKNTTPS TNITKPRTWH RTNNSSASPL SGNKPSSSAN PLQRQMPKKA AFFQSPSYIR 1380 KGNSLVRKPV AVPALPQGSH SLSSSVYRMN PGVVDEVKKG TGPNSRVGAV DLRTGGANAS 1440 FERPTTPPLS SVSKVPNCTS NSPGECTSSP LAEPSISDCC ETAINHASSM EINDVLNSPE 1500 DGLKTFETLN QNGSVNNLEE CTEQSESNLV PSNAKRLTYV KPKSNQLVAT SECGRTSILN 1560 ADKNQNFSAP SDGYYKKSKN QLIRTALESH IKQAVTMSDN KTNSVGQVAA KVMPSRTVGK 1620 RQSNKVVGKT HKPSKFSLVW TLHSARLSKN DGNSLRRPKV LPQLFPWKRM TYWRSFKLNS 1680 VSSCNSSLST ISRKMLLSRK RNTVYTRSIN GFSIRKSKVF SVGGSSLKWS KSIERNSRKA 1740 NEEATLAVAE AERKKREQKG TVSRTGKRSY SCHKVVHGTE LRPGERIFRI GSLRYKMDSS 1800 RHSLQRISDD ESSCSSDHLS ENSTKKTYVP RRLVIGNDEY VRIGNGNQLV RDPKKRTRVL 1860 ASEKVRWSLH TARLRLVKKR KYCQFFTRFG KCNKDDGKCP YIHDPSKIAV CTKFLKGLCS 1920 NPNCKLTHKV IPERMPDCSY FLQGLCTNEN CPYRHVHVNP NASTCEGFLR GYCADGNECR 1980 KKHSYVCPNF EATGSCPQGS KCKLHHPKKQ SKGKKSKRSI KHNNARGRYF GIDMLVPKRM 2040 VPESHRALDD DDVFFDGKFS DYIRLDVRDD DAGEIHQVMN DQMTFGDNDS SDLRLDDLDE 2100 LIKPIRIMNR *

Sequence ? help Back to Top

Protein Sequence Length: 2111 aa Download sequence Send to blast

MDPSSYVNHH HHHHHQQNNH TRYAPLSPPL HLLSPTPPLP PHAPPYQQSP NNLYPSRYHV  60
PPPQPPPQLA PPPPPPQQPQ QQPYHPLPAP PPSVQRQQHP NHHPYNPQHP QYTFNPNFNS  120
NPKPNNVSHQ FHDFPQRRVP EFDTRPEYWP DNRASRPHSV SSLDREARYH QFDRRPASLA  180
VDRYRHDVEG SSRYRALELN LRERPELGRV HSDNWIPDRA SRDFGIVSMG FESNSNNSGF  240
CHKVAENVRW GSRLRDQLID NGNNEINERD EMRVFSRKID YYQESELERF SDRGSSREDS  300
HEFNRAPRKQ IQKKSALLRI QKAQQNHRNR EDERSHYMGY NNEGKTGSFR GKDLVLHSDH  360
GLEERERKVS PVELDVSFKS NSLVAKAIVT PSSSSPVSDL NVKPRTSKIR KVMIFDKANE  420
SRAKLDVSTS VLNSGSGSED SKQSAGKVKS CGIGNVHDGV TKPSSKRTNV SLRNGKFERS  480
CKVTVKLDDL TCVTEETPIT DKKPESLEGK STIPCIGNMR DGGLQTCSDR ANVSVRENKV  540
EGTLKSTLSD KSGASVGKPS SLKATKKKKI VRKVEKKVTN SPLNLANSKS PKSCDQPVKA  600
DTSTYCLSAI SVADKSVTPP KMKIASAAGC SAGAVGLECC PKESALLLEY EKVTGASKDV  660
VSKEVGTDVD PGSSVAPKIK RKRNSSTLPL RSSGHEESKV DQRFVNSDNS VFGLRIVSNI  720
KEDRTETLNE SITSRAFSVE DIDKQFYHSE SNNDGLLRSE DINVHEDIVD IGSSSVAMHG  780
TPGFECGSSN TQEINIACDI GNVNSGSKQA CATAGNPVVE DGTTGRLPEA NCSAGSNKMP  840
HLPCSEETQI NSGSIYADCS NHNRSTIHTP DIGYVNSGES NCEIGDDFVK HLVSSTLSLG  900
NSGAERIPNA AESPECTAGS ADVLTSANCL DTTIITSGVS APPEVMVSDF GWLDTFREVS  960
ASADGKSPEN KKRKISTSSS DVTASVINEG VAVSNISKSA VQLPSNFTDD QLQLEQAVKV  1020
SSIDGLHKEG IDLLLVNSSV VGPSQSVGFF RDAYKINHPR IDPCSAFIES VAPSSPCLHL  1080
LKLGGDQLST ATQVSAQNNH QIVAMDIEGD DRGKVHVGTA EEQKFISSEV SQCRITPEHM  1140
SSSLDQRLPS TDVEDDNHIP LKDDLPSALI SLVFGVDANE VSATNSNDEV MPAPDIVSDV  1200
GSPYNHDNFV ISASTCKAPL CQQSEKQAFG DEKFSDDKPM AEGAGNVSAL VSYSQHSRTI  1260
LKSNDAIQTN QSVAGKEVLL PSHDSKNTNS PNSISGATRR RKNPLSHVVP KSYPTRSSFV  1320
FSASKNTTPS TNITKPRTWH RTNNSSASPL SGNKPSSSAN PLQRQMPKKA AFFQSPSYIR  1380
KGNSLVRKPV AVPALPQGSH SLSSSVYRMN PGVVDEVKKG TGPNSRVGAV DLRTGGANAS  1440
FERPTTPPLS SVSKVPNCTS NSPGECTSSP LAEPSISDCC ETAINHASSM EINDVLNSPE  1500
DGLKTFETLN QNGSVNNLEE CTEQSESNLV PSNAKRLTYV KPKSNQLVAT SECGRTSILN  1560
ADKNQNFSAP SDGYYKKSKN QLIRTALESH IKQAVTMSDN KTNSVGQVAA KVMPSRTVGK  1620
RQSNKVVGKT HKPSKFSLVW TLHSARLSKN DGNSLRRPKV LPQLFPWKRM TYWRSFKLNS  1680
VSSCNSSLST ISRKMLLSRK RNTVYTRSIN GFSIRKSKVF SVGGSSLKWS KSIERNSRKA  1740
NEEATLAVAE AERKKREQKG TVSRTGKRSY SCHKVVHGTE LRPGERIFRI GSLRYKMDSS  1800
RHSLQRISDD ESSCSSDHLS ENSTKKTYVP RRLVIGNDEY VRIGNGNQLV RDPKKRTRVL  1860
ASEKVRWSLH TARLRLVKKR KYCQFFTRFG KCNKDDGKCP YIHDPSKIAV CTKFLKGLCS  1920
NPNCKLTHKV IPERMPDCSY FLQGLCTNEN CPYRHVHVNP NASTCEGFLR GYCADGNECR  1980
KKHSYVCPNF EATGSCPQGS KCKLHHPKKQ SKGKKSKRSI KHNNARGRYF GIDMLVPKRM  2040
VPESHRALDD DDVFFDGKFS DYIRLDVRDD DAGEIHQVMN DQMTFGDNDS SDLRLDDLDE  2100
LIKPIRIMNR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6fbs_C	5e-20	1883	2008	41	168	Cleavage and polyadenylation specificity factor subunit 4
6fuw_C	5e-20	1883	2008	41	168	Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007019226.2	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At1g21580
TrEMBL	A0A061FH95	0.0	A0A061FH95_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1
STRING	EOY16451	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5780	10	12

Link Out ? help Back to Top
Phytozome	Thecc1EG035217t1
Entrez Gene	18592420

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]