PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG035123t1 | ||||||||
Common Name | TCM_035123 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LBD | ||||||||
Protein Properties | Length: 152aa MW: 17051.3 Da PI: 7.3695 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.5 | 1.4e-40 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaC++lrr+C++dC+++pyfp+++p++f +h+++Gasnv kll++lp++ r +a++sl++eA++r++dPvyG+vg+i+ lqqq++++ ++ Thecc1EG035123t1 5 RCAACRYLRRRCPPDCIFSPYFPSNNPQRFVSIHRIYGASNVAKLLQQLPTHLRAEAADSLYFEAQCRVEDPVYGCVGLIFLLQQQIHNAVSQ 97 6******************************************************************************************** PP DUF260 94 lallkee 100 la++++e Thecc1EG035123t1 98 LAKTQAE 104 **99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.415 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-40 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MNSGRCAACR YLRRRCPPDC IFSPYFPSNN PQRFVSIHRI YGASNVAKLL QQLPTHLRAE 60 AADSLYFEAQ CRVEDPVYGC VGLIFLLQQQ IHNAVSQLAK TQAEIAVLKS QAQHPQAQQV 120 EVEPEFNNFL QQQLDYVADL NFSNQGSSGF M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017981145.1 | 1e-107 | PREDICTED: LOB domain-containing protein 24 | ||||
Swissprot | P59468 | 2e-54 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A061FP58 | 1e-107 | A0A061FP58_THECC; LOB domain-containing protein 23 | ||||
STRING | EOY16304 | 1e-108 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-45 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG035123t1 |
Entrez Gene | 18592343 |
Publications ? help Back to Top | |||
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