PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG035046t1

Common Name

TCM_035046

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 442aa MW: 48793.8 Da PI: 9.8886

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG035046t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.1e-05	208	230	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +nL+ H+ H Thecc1EG035046t1 208 SCPECGEIFMKAENLELHQAIrH 230 8******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	1.88E-7	41	90	No hit	No description
PROSITE profile	PS50157	9.182	207	235	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	207	230	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.84E-25	232	440	No hit	No description
Gene3D	G3DSA:3.90.228.10	5.2E-19	233	439	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MAGPTHQRKP TKETHQNQKK RPQKNDKPPS WAVVKGLFFG KHPQPQQEQQ QQLQQQQKQH 60 QQQQKQEQQQ QKQQQKKKQK EKQPEQVMEE TGKKCKKMRC SGSLCSNTKV MHRPEIASPE 120 VHKKRASLGS SNNDASSRSM KAPLHELNGV VSSTNSSLSV SSASASSAGG SFRGMPFRRF 180 SGCYECRMVV DPVLGIARDP SLRGSICSCP ECGEIFMKAE NLELHQAIRH AVSELGPEDT 240 SKNIVEIIFQ SSWLKKQTPI CQIDRILKVH NTSKTISKFE EYRDSIKSKA TKLPKKHPRC 300 IADGNELLRF HCTTFACSLG LNGSSNLCTS IPNCNVCSII KNGFKVAQEL SGGSNGKGIL 360 TTATSGKAHD MAAGVEEIGN DKRAMLVCRV IAGRVKKSME GSMEDCDSVA SAVGVYSNLD 420 ELYVFNPKAI LPCFVVIYRG F*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MAGPTHQRKP TKETHQNQKK RPQKNDKPPS WAVVKGLFFG KHPQPQQEQQ QQLQQQQKQH  60
QQQQKQEQQQ QKQQQKKKQK EKQPEQVMEE TGKKCKKMRC SGSLCSNTKV MHRPEIASPE  120
VHKKRASLGS SNNDASSRSM KAPLHELNGV VSSTNSSLSV SSASASSAGG SFRGMPFRRF  180
SGCYECRMVV DPVLGIARDP SLRGSICSCP ECGEIFMKAE NLELHQAIRH AVSELGPEDT  240
SKNIVEIIFQ SSWLKKQTPI CQIDRILKVH NTSKTISKFE EYRDSIKSKA TKLPKKHPRC  300
IADGNELLRF HCTTFACSLG LNGSSNLCTS IPNCNVCSII KNGFKVAQEL SGGSNGKGIL  360
TTATSGKAHD MAAGVEEIGN DKRAMLVCRV IAGRVKKSME GSMEDCDSVA SAVGVYSNLD  420
ELYVFNPKAI LPCFVVIYRG F*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007018982.2	0.0	PREDICTED: uncharacterized protein LOC18592281
TrEMBL	A0A061FHR6	0.0	A0A061FHR6_THECC; C2H2-like zinc finger protein
STRING	EOY16207	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-101	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Thecc1EG035046t1
Entrez Gene	18592281

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]