PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG035002t1
Common NameTCM_035002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ARF
Protein Properties Length: 664aa    MW: 73331.2 Da    PI: 7.9836
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG035002t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.81.1e-24203304199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+ltpsd+++ g +++p+ +a+++        +++ +  tl+++d +g +W++++iyr++++r++lt+GW++Fv++++L +gD+vvF+  +
  Thecc1EG035002t1 203 FAKILTPSDANNGGGFSVPRFCADSIfppldynAEPPVQ--TLSVTDVRGGVWDFRHIYRGTPRRHLLTTGWSKFVNQKKLIAGDSVVFM--R 291
                       89*********************999****985444444..9************************************************..5 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       + +++++++v+r+
  Thecc1EG035002t1 292 DCNGNMFIGVRRA 304
                       689999****986 PP

2Auxin_resp84.81.7e-28341424183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa++a+++ +FevvY+Pra+ ++Fvv++e ve+ l++ ++ G+R+kma+etedss+ ++ +Gtv++    d+  W++S+Wr+L+
  Thecc1EG035002t1 341 AAERAAKGLPFEVVYYPRAGLADFVVRAELVEAGLNIFWAGGTRVKMAVETEDSSRMTWfQGTVMSAAVPDSGPWTGSPWRMLQ 424
                       68899*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-34196308IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-29196316IPR015300DNA-binding pseudobarrel domain
CDDcd100172.65E-19202299No hitNo description
SMARTSM010191.1E-21203305IPR003340B3 DNA binding domain
PfamPF023627.0E-22203304IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647203305IPR003340B3 DNA binding domain
PfamPF065074.6E-25341424IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MAFPWFLVSL NANKTLLSCP LLRPRDGTLS FLHHLRHTKK HYKNWKKESL RLCIFSTHRS  60
AVLSYFSFIP LNSLPFFSTQ TLSPPMPPPR PPLPPPEFRH VDSRIWRACA GSSVQIPTVH  120
SRVYYFPQGH VEQSWGSTPA LSSLVLSRPL IPCVISEVHC LADPKTDEVF AKLLLVPVDP  180
SRLPNQFLNI NGDDEDSDKI VSFAKILTPS DANNGGGFSV PRFCADSIFP PLDYNAEPPV  240
QTLSVTDVRG GVWDFRHIYR GTPRRHLLTT GWSKFVNQKK LIAGDSVVFM RDCNGNMFIG  300
VRRAMKREAG GDFGRWREPS DGRAMQGEGR GRMTAEAVAE AAERAAKGLP FEVVYYPRAG  360
LADFVVRAEL VEAGLNIFWA GGTRVKMAVE TEDSSRMTWF QGTVMSAAVP DSGPWTGSPW  420
RMLQVAWDEP EVLQNAKRVS PWQVEIVSSS PLNSSFPSAK KLKFSQDSGP ADAEGEIFFP  480
MTGLTNSMMG YMNPSMLNYN SFPAGMQGAR QNHFHLQSLT NYASENTPIM CTDNFSGNYM  540
LPKLKGRSTE LNIGSSQSDN LSPDSQSSIL SYGTEVTVNG GSNSTKVGVS SFQLFGKIIH  600
MKEPVRSRFD DVGSIEDDGG KRDDEAAGPE KSLDLSLAYG YSNLLNRLDV QCQRASAVEG  660
FSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-6910144951392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021284458.10.0LOW QUALITY PROTEIN: auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A061FGG70.0A0A061FGG7_THECC; Auxin response factor
STRINGEOY161410.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  3. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  4. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  5. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  6. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  7. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]