PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG035002t1 | ||||||||
Common Name | TCM_035002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ARF | ||||||||
Protein Properties | Length: 664aa MW: 73331.2 Da PI: 7.9836 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.8 | 1.1e-24 | 203 | 304 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+ltpsd+++ g +++p+ +a+++ +++ + tl+++d +g +W++++iyr++++r++lt+GW++Fv++++L +gD+vvF+ + Thecc1EG035002t1 203 FAKILTPSDANNGGGFSVPRFCADSIfppldynAEPPVQ--TLSVTDVRGGVWDFRHIYRGTPRRHLLTTGWSKFVNQKKLIAGDSVVFM--R 291 89*********************999****985444444..9************************************************..5 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 + +++++++v+r+ Thecc1EG035002t1 292 DCNGNMFIGVRRA 304 689999****986 PP | |||||||
2 | Auxin_resp | 84.8 | 1.7e-28 | 341 | 424 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa++a+++ +FevvY+Pra+ ++Fvv++e ve+ l++ ++ G+R+kma+etedss+ ++ +Gtv++ d+ W++S+Wr+L+ Thecc1EG035002t1 341 AAERAAKGLPFEVVYYPRAGLADFVVRAELVEAGLNIFWAGGTRVKMAVETEDSSRMTWfQGTVMSAAVPDSGPWTGSPWRMLQ 424 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.6E-34 | 196 | 308 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-29 | 196 | 316 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.65E-19 | 202 | 299 | No hit | No description |
SMART | SM01019 | 1.1E-21 | 203 | 305 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-22 | 203 | 304 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.647 | 203 | 305 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.6E-25 | 341 | 424 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MAFPWFLVSL NANKTLLSCP LLRPRDGTLS FLHHLRHTKK HYKNWKKESL RLCIFSTHRS 60 AVLSYFSFIP LNSLPFFSTQ TLSPPMPPPR PPLPPPEFRH VDSRIWRACA GSSVQIPTVH 120 SRVYYFPQGH VEQSWGSTPA LSSLVLSRPL IPCVISEVHC LADPKTDEVF AKLLLVPVDP 180 SRLPNQFLNI NGDDEDSDKI VSFAKILTPS DANNGGGFSV PRFCADSIFP PLDYNAEPPV 240 QTLSVTDVRG GVWDFRHIYR GTPRRHLLTT GWSKFVNQKK LIAGDSVVFM RDCNGNMFIG 300 VRRAMKREAG GDFGRWREPS DGRAMQGEGR GRMTAEAVAE AAERAAKGLP FEVVYYPRAG 360 LADFVVRAEL VEAGLNIFWA GGTRVKMAVE TEDSSRMTWF QGTVMSAAVP DSGPWTGSPW 420 RMLQVAWDEP EVLQNAKRVS PWQVEIVSSS PLNSSFPSAK KLKFSQDSGP ADAEGEIFFP 480 MTGLTNSMMG YMNPSMLNYN SFPAGMQGAR QNHFHLQSLT NYASENTPIM CTDNFSGNYM 540 LPKLKGRSTE LNIGSSQSDN LSPDSQSSIL SYGTEVTVNG GSNSTKVGVS SFQLFGKIIH 600 MKEPVRSRFD DVGSIEDDGG KRDDEAAGPE KSLDLSLAYG YSNLLNRLDV QCQRASAVEG 660 FSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-69 | 101 | 449 | 51 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021284458.1 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 17 | ||||
Swissprot | Q84WU6 | 0.0 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A061FGG7 | 0.0 | A0A061FGG7_THECC; Auxin response factor | ||||
STRING | EOY16141 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 0.0 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG035002t1 |
Entrez Gene | 18592243 |