PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034993t1

Common Name

TCM_034993

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 359aa MW: 40624.7 Da PI: 7.237

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034993t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.1e-11	73	113	3	40
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 +k +rr+++NReAAr+sR+RKka++++Le k ++Le+ Thecc1EG034993t1 73 TDKIQRRLAQNREAARKSRLRKKAYVQQLESsrlKLAQLEQ 113 7899**************************83333444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.2E-8	65	120	No hit	No description
SMART	SM00338	5.5E-5	71	131	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.8E-8	73	111	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.163	73	117	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.47E-7	75	116	No hit	No description
PROSITE pattern	PS00036	0	78	93	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-28	161	236	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MSSPSTELTK RMAIYEQFHQ ISRWGDVFNS DNSPNTGSST IVQVDVRLDN KAEYISCEQV 60 EPSRSDQETN KPTDKIQRRL AQNREAARKS RLRKKAYVQQ LESSRLKLAQ LEQELERARQ 120 QGIYISSASD TGYFGLSGTV NSGITAFEME YGHWVEEQNK QICELRSALQ AHITDIELRI 180 LVESGLNHYC NLFRMKADAA KADIFYLISG IWRTSAERFF HWIGGFRPSE LLNAVMSQIE 240 PLTDQQHLEV CNLRQSSQQA EDALSQGIDK LQQNLAQSVA ADLSSGNYRV QMAAAIDKLE 300 ALEGFVNQAD HLRQQTLQQM ARILTTRQAA RGLLALGEYF HRLRALSSLW AARPREPA*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MSSPSTELTK RMAIYEQFHQ ISRWGDVFNS DNSPNTGSST IVQVDVRLDN KAEYISCEQV  60
EPSRSDQETN KPTDKIQRRL AQNREAARKS RLRKKAYVQQ LESSRLKLAQ LEQELERARQ  120
QGIYISSASD TGYFGLSGTV NSGITAFEME YGHWVEEQNK QICELRSALQ AHITDIELRI  180
LVESGLNHYC NLFRMKADAA KADIFYLISG IWRTSAERFF HWIGGFRPSE LLNAVMSQIE  240
PLTDQQHLEV CNLRQSSQQA EDALSQGIDK LQQNLAQSVA ADLSSGNYRV QMAAAIDKLE  300
ALEGFVNQAD HLRQQTLQQM ARILTTRQAA RGLLALGEYF HRLRALSSLW AARPREPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017981338.1	0.0	PREDICTED: transcription factor TGA7 isoform X2
Swissprot	Q93ZE2	1e-170	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A061FFL9	0.0	A0A061FFL9_THECC; BZIP transcription factor family protein
STRING	EOY16125	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-161	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG034993t1
Entrez Gene	18592234

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]