PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034881t1
Common NameTCM_034881
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 272aa    MW: 30235.3 Da    PI: 7.8456
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034881t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-06114133120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C+ C k+F+r  nL+ H+
  Thecc1EG034881t1 114 FSCHVCFKTFNRYNNLQMHM 133
                       89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.41E-5109136No hitNo description
PROSITE profilePS5015710.055114141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-4114133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576673.91E-5180218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEPSDISYDS DLVSSTNNHT DVEPLDLFPG AMQNSLEPMP LLSCFLGSSD TTLDGNPKAE  60
CNEDKEDVTV ALHIGLPDPS NTPFSPNGKD TANGAAKQYW IPTPEQILIG FTNFSCHVCF  120
KTFNRYNNLQ MHMWGHGSQY RKGPESLKGT QPRAMLGIPC YCCAEGCKNN IEHARAKPLK  180
DFRTLQTHYK RKHGLKPFMC RKCGKFLAVK GDWRTHEKNC GKRWLCVCGS DFKHKRSLKD  240
HIKAFGSGHG PFPPSFDGVE VLEDTASSLH V*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5800831e-57JX580083.1 Gossypium hirsutum clone NBRI_GE12445 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018746.20.0PREDICTED: protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-115TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A061FFX40.0A0A061FFX4_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRINGEOY159710.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]