PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034835t1
Common NameTCM_034835
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 432aa    MW: 48279 Da    PI: 5.8013
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034835t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.6e-53581851128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp  +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+
  Thecc1EG034835t1  58 LPPGFRFHPTDEELITFYLASKVFNGSFCG-VEIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVY 149
                       79*************************877.45***************8888899************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+ +g+l g+kktLvfy+grap+gekt+Wvmheyrl
  Thecc1EG034835t1 150 SAsSGALLGMKKTLVFYRGRAPRGEKTKWVMHEYRL 185
                       9978889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-6453207IPR003441NAC domain
PROSITE profilePS5100559.99958207IPR003441NAC domain
PfamPF023652.0E-2759185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDSRMLHLIL STENKIIILF TLPLLFPLRD ISCVCEKMLS VEELLSELAG EELNEQGLPP  60
GFRFHPTDEE LITFYLASKV FNGSFCGVEI AEVDLNRCEP WELPDVAKMG EREWYFFSLR  120
DRKYPTGLRT NRATGAGYWK ATGKDREVYS ASSGALLGMK KTLVFYRGRA PRGEKTKWVM  180
HEYRLDGDFS YRHACKEEWV ICRIFHKTGE KKTALAQGQS FILEVSSSPA SSLPPLLETP  240
TPFLESQSQT PMQAQNSFVI HRQENDLKSL INPVVSQTPL FPADGLQVQP SFSANPTTIT  300
SSTTNTTDKN AATDTSNPSA SMLFKSLLSH QNCILKEQAT IPKQCKTEAN FSHFHLPDAS  360
LNWMDKIHPN PCQNPLFFEM DCSVLGFSEG VTAGDATVHD MSTSIAFNRA GVQMMLDPPI  420
RAPGESWQLD C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-515320715168NAC domain-containing protein 19
3swm_B5e-515320715168NAC domain-containing protein 19
3swm_C5e-515320715168NAC domain-containing protein 19
3swm_D5e-515320715168NAC domain-containing protein 19
3swp_A5e-515320715168NAC domain-containing protein 19
3swp_B5e-515320715168NAC domain-containing protein 19
3swp_C5e-515320715168NAC domain-containing protein 19
3swp_D5e-515320715168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018687.20.0PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X2
SwissprotQ9S8511e-109NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A061FGR20.0A0A061FGR2_THECC; NAC domain transcriptional regulator superfamily protein
STRINGEOY159120.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-96NAC family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  3. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  4. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  5. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  6. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]