PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034806t1

Common Name

TCM_034806

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 746aa MW: 84363.2 Da PI: 7.7176

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034806t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.8	1.2e-30	63	150	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r++ ++ +++r+r+ tr+gCka+++vkk+++gkw v+kl+++HnHel+p Thecc1EG034806t1 63 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRDAGQN--SSKRQRTITRVGCKAQITVKKQTSGKWAVSKLVKDHNHELVP 150 9***************************************9998..9999**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-28	63	150	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-30	271	361	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.719	555	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.8E-11	560	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.9E-8	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence Send to blast
MDIHPPNLAI EFDDDTTALD LEHPLPFDHY DPALAQPLST LGDPNLEPYE GMEFDSEQAA 60 RIFYNSYARR IGFSTRVSVY QRSRRDGSII CRQIVCSREG FRRDAGQNSS KRQRTITRVG 120 CKAQITVKKQ TSGKWAVSKL VKDHNHELVP PDKVHCLRSH RHVSGPARSL IDTLQAAGMG 180 PSGVMSVLIK ESGGVNNVGF TKVDCQNYMS SSRQRTLGSG GQVVFDYLKQ MQTEDPAFFY 240 AVQGDFGNST GNIFWADAHS RMNYNHFGDT VAFDTTYRTN RYRVPFAPFT GWNHHGQPVL 300 FGCALLLNES ESSFVWLFQT WLAAMSGRHP ISITTDQDRI IRAAVAQVFQ GTRHRFCKWN 360 VFREAQEKLS DVYHSHPTFE AEIQRCINVT ETVDEFESCW ESLLLRYSLG DNEWLQSMYN 420 TRQHWVPVYL RDTFFGEMSI NQGSDSINSY FDGYINASTN AQVLIKQYEK AVANRYEKEV 480 KADYDTLNIA PALKTPSPME KQAANLYTRK IFMKFQEELV ETLAYPATAI DDSGLEVTYR 540 VAKFGEDHQA HFVKFNVFGK KASCSCQMFE FSGIICKHVL AVFRVTNVLT LPSHYILKRW 600 TRNAKSGAAV DGCTVELPSN IQESYAARYD NLCHEAIKFV REGTGSIHTF NVAMDALHEA 660 AKKVASAKKN DSAVIKNSPF NSGQQLQSGS ENQEKKIQEL SVELEDASRR CEGYRAKLAA 720 VLKDMEEQKL KMSVKVQNVR LILKD*

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence Send to blast

MDIHPPNLAI EFDDDTTALD LEHPLPFDHY DPALAQPLST LGDPNLEPYE GMEFDSEQAA  60
RIFYNSYARR IGFSTRVSVY QRSRRDGSII CRQIVCSREG FRRDAGQNSS KRQRTITRVG  120
CKAQITVKKQ TSGKWAVSKL VKDHNHELVP PDKVHCLRSH RHVSGPARSL IDTLQAAGMG  180
PSGVMSVLIK ESGGVNNVGF TKVDCQNYMS SSRQRTLGSG GQVVFDYLKQ MQTEDPAFFY  240
AVQGDFGNST GNIFWADAHS RMNYNHFGDT VAFDTTYRTN RYRVPFAPFT GWNHHGQPVL  300
FGCALLLNES ESSFVWLFQT WLAAMSGRHP ISITTDQDRI IRAAVAQVFQ GTRHRFCKWN  360
VFREAQEKLS DVYHSHPTFE AEIQRCINVT ETVDEFESCW ESLLLRYSLG DNEWLQSMYN  420
TRQHWVPVYL RDTFFGEMSI NQGSDSINSY FDGYINASTN AQVLIKQYEK AVANRYEKEV  480
KADYDTLNIA PALKTPSPME KQAANLYTRK IFMKFQEELV ETLAYPATAI DDSGLEVTYR  540
VAKFGEDHQA HFVKFNVFGK KASCSCQMFE FSGIICKHVL AVFRVTNVLT LPSHYILKRW  600
TRNAKSGAAV DGCTVELPSN IQESYAARYD NLCHEAIKFV REGTGSIHTF NVAMDALHEA  660
AKKVASAKKN DSAVIKNSPF NSGQQLQSGS ENQEKKIQEL SVELEDASRR CEGYRAKLAA  720
VLKDMEEQKL KMSVKVQNVR LILKD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007018641.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A061FGM1	0.0	A0A061FGM1_THECC; Far1-related sequence 5 isoform 1
STRING	EOY15867	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Thecc1EG034806t1
Entrez Gene	18592072

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]