PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034803t1
Common NameTCM_034803
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family SBP
Protein Properties Length: 1080aa    MW: 119918 Da    PI: 8.5174
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034803t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.94.4e-41150227178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cqv++C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Thecc1EG034803t1 150 MCQVDNCKEDLSNAKDYHRRHKVCEVHSKATKALVGKHMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 227
                       6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-33144212IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.214148225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.11E-38149229IPR004333Transcription factor, SBP-box
PfamPF031108.4E-29151224IPR004333Transcription factor, SBP-box
CDDcd002049.82E-7828970No hitNo description
SuperFamilySSF484032.1E-6831977IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.8E-5859976IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1080 aa     Download sequence    Send to blast
MEEVGAQVAP PIFMHQALAN RFCEPPSLPR KRDLSCQTPA FQYQNPSQQR VANPRDWNPK  60
LWEWDAVRFI AKPLDTEILQ PGTSTAEQRK KERVNGNGNS ITSKKTAAVN EDDDSLQLNL  120
GGRLNSVEEP VSRPNKKVRS GSPGSTNYPM CQVDNCKEDL SNAKDYHRRH KVCEVHSKAT  180
KALVGKHMQR FCQQCSRFHL LSEFDEGKRS CRRRLAGHNR RRRKTQPEDV TSRLLLPVNR  240
DNAGNGNLDI VNLLTALARS QGKNEDKSIN CSSLPNKDQL VQILNKINLL PLPVDLAAKL  300
PNVGVLNRKN QEQPLVGHQN QLNGKNTSSP STMDLLAALS ATLTSSSNNA LAILSQRSTQ  360
SSDSEKTKST CPDHVAAPSM QNRVPLEFAS GGGERSSTSY QSPVEDSECQ IQETRANLPL  420
QLFSSSPEND SPPKLASSRK YFSSDSSNPM EERSPTSSPA VQKLFPMHST VEAVKYEKMP  480
IGRESNAIAE GSRTHGSILP LELFSGSKRG NAHGSFQQFP SQAGYTSSSG SDHSPSSLNS  540
DAQDRTGRII FKLFDKDPSH FPGTLRTQIY NWLSNSPSEM ESYIRPGCVV LSLYVSMSYV  600
AWEQLEGNLL QYVNSLLHYT DSDFWRKARF LVHTGQQLAS HKDGKIRLCK SWRTWSSPEL  660
ISVSPLAIVG GQETSLLLRG RNLTNPGTKI HFAYMGGYSS MQISGSAYQG TTYDEVSMGG  720
FKVQVSSPSA LGRFFIEVEN GFKGNNFPII IADATICKEL RLLESELDIE AKASDIISEE  780
HAYDGRRPRS REEVLHFLNE LGWLFQRRST CPLPKSSDYL LCRFKFLLIF SVERDYCALV  840
KVLLDMLVES NLYMDGLSRE SVEMLSEIHL LSRAVKRRCR KMADLLIHYS ISSIDESSKK  900
YIFPPNLEGA GGITPLHLAA CTSGSDDMVD VLTDDPQEIG LACWNSLLDA NGQSPYAYAI  960
MRNNHSYNKL VARKYADRRN GQVSVTIGQD EQSGLTAVQL HEISSKFKQD RSSCAKCAVV  1020
ATRYNKKFPG SQGLLQRPYV HSMLAIAAVC VCVCLFLRGS PDIGSVAPFK WENLDFGTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-32141224184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1872877RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018638.20.0PREDICTED: squamosa promoter-binding-like protein 14 isoform X1
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A061FG270.0A0A061FG27_THECC; Squamosa promoter binding protein-like 14
STRINGEOY158630.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]