PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG034722t1 | ||||||||
Common Name | TCM_034722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 24493.8 Da PI: 8.4921 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.3 | 5.5e-29 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ Cvl+ + p++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++l+ Thecc1EG034722t1 2 SCNGCRVLRKGCSETCVLRSSLrwiesPEAQGNATLFLAKFFGRSDLLSLISSVPETQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHLC 94 6******************************************************************************************** PP DUF260 89 qlkaelallk 98 q++a+++l++ Thecc1EG034722t1 95 QAAADTVLQG 104 ****998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.277 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-24 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCVLR SSLRWIESPE AQGNATLFLA KFFGRSDLLS LISSVPETQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHLCQAAADT VLQGGALRPI PGILAGVRTP 120 SCDESSDRFC FNSCDFQSRY AQSKPLMTMM MMENQSASAA SDLSLSLTTK LGGGRRGSGR 180 RYEEERKRPR AAAAASLYSE ESEITTFKSK ENEGSQERKI LNLFV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007018527.2 | 1e-164 | PREDICTED: LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 2e-64 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A061FGD5 | 1e-163 | A0A061FGD5_THECC; LOB domain-containing protein 38, putative | ||||
STRING | EOY15752 | 1e-164 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-64 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG034722t1 |
Entrez Gene | 18591997 |
Publications ? help Back to Top | |||
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