PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034717t1
Common NameTCM_034717
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 381aa    MW: 41576.2 Da    PI: 4.6606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034717t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-103063461055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Thecc1EG034717t1 306 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 346
                       9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-14296361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.926296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-12301355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.28E-12305350No hitNo description
PfamPF000101.5E-7306346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MESLAAFPDG EWDSFNRMFS TEELDFTQQI LHQFSFPMEH DEGLSFINSS TFCPIPEGTM  60
SIAGVTESLS YSSNAIDSTF HYNSQESSQS SNSSGSVFVS PPNLETYCLS GSNHVAVTND  120
ITMSLDMSMD IGGVGDKITG SFPPVFPNLA REDTVNVIED LSTDSLGKLL DASHPSANTV  180
LANELLLKRK FDVLELHAEG DKMIINSNSS ENAKRRPRVS KDASKVYKNV QSKKNRKISL  240
NGNEGESNIG SDGQSSSTCS SEDDIVSQDT NGVATSDSKA SPALNLNGKT RASRGSATDP  300
QSLYARKRRE RINERLRILQ NLVPNGTKVD ISTMLEEAVH YVKFLQLQIK LLSSDDLWMY  360
APIAYNGIDI GLNEKISTLL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018521.10.0PREDICTED: transcription factor bHLH85
TrEMBLA0A061FFD10.0A0A061FFD1_THECC; Root hair defective 6-like 2, putative
STRINGEOY157460.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-45bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]