PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034655t1

Common Name

TCM_034655

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRF

Protein Properties

Length: 615aa MW: 66361.6 Da PI: 7.645

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034655t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	221	265	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Thecc1EG034655t1 221 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 265 79****************************************985 PP
2	QLQ	62.6	1e-21	151	187	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k Thecc1EG034655t1 151 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRK 187 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.5E-12	151	187	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.6E-16	152	186	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.066	152	187	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	221	265	IPR014977	WRC domain
Pfam	PF08879	7.3E-21	222	264	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence Send to blast
MDFGVVGLEG FVGSETTTTG LASLASDPET KQKWYGSGFL KQERSGNNED DWRSSKLAKI 60 DDFSASKAML LQQRNTLLRS NTSIFSDGQQ QQQMLSFSAP KSEALSVDRS SQNVTFPYFH 120 LTSPAYTRNT GYNTGGFNGA NMQGVLAGAR GPFTPSQWME LEHQALIYKY ITANVPIPSN 180 LLIPIRKALD SADFSSFSGG LLRPNTLGWG TFHLGFSNNT DPEPGRCRRT DGKKWRCSRD 240 AVADQKYCER HMNRGRHRSR KPVEGQSGHS AAATTVTTTK LMPTVSSSSA SVVGPASGGG 300 ESNSLAIAQQ QFKNLQPGGA SNLSAAAPLN RLLLNKDTVG ERMQDTAPGL SMISPTGELK 360 SKENPFLIPK QQISYEDNSR NEFGIVSSDS LLNPSHKSSS LIKCRNFGSS HDLTSQDTES 420 QHSLRQFMDD WPKSQSDRSA ISWPEVDVQS DRTQLSISIP MAASDFMSST SSPNNEKVTL 480 SPLRLSREFD PIHMGLGVGS VINEPNQRQA NWIPISWETS MGGPLGEVLH STNSSTADCK 540 NSSALNLMTE GWDNSPRLGS SPTGVLQKTT FGSLSNSSAG SSPRAENNKT HEGASLCNDL 600 LGSTLVHSSS LPAL*

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence Send to blast

MDFGVVGLEG FVGSETTTTG LASLASDPET KQKWYGSGFL KQERSGNNED DWRSSKLAKI  60
DDFSASKAML LQQRNTLLRS NTSIFSDGQQ QQQMLSFSAP KSEALSVDRS SQNVTFPYFH  120
LTSPAYTRNT GYNTGGFNGA NMQGVLAGAR GPFTPSQWME LEHQALIYKY ITANVPIPSN  180
LLIPIRKALD SADFSSFSGG LLRPNTLGWG TFHLGFSNNT DPEPGRCRRT DGKKWRCSRD  240
AVADQKYCER HMNRGRHRSR KPVEGQSGHS AAATTVTTTK LMPTVSSSSA SVVGPASGGG  300
ESNSLAIAQQ QFKNLQPGGA SNLSAAAPLN RLLLNKDTVG ERMQDTAPGL SMISPTGELK  360
SKENPFLIPK QQISYEDNSR NEFGIVSSDS LLNPSHKSSS LIKCRNFGSS HDLTSQDTES  420
QHSLRQFMDD WPKSQSDRSA ISWPEVDVQS DRTQLSISIP MAASDFMSST SSPNNEKVTL  480
SPLRLSREFD PIHMGLGVGS VINEPNQRQA NWIPISWETS MGGPLGEVLH STNSSTADCK  540
NSSALNLMTE GWDNSPRLGS SPTGVLQKTT FGSLSNSSAG SSPRAENNKT HEGASLCNDL  600
LGSTLVHSSS LPAL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007018432.2	0.0	PREDICTED: growth-regulating factor 1
Swissprot	Q6AWY3	1e-120	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A061FG66	0.0	A0A061FG66_THECC; Growth-regulating factor 1
STRING	EOY15657	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1454	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-119	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Thecc1EG034655t1
Entrez Gene	18591934

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]