PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034649t1
Common NameTCM_034649
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 483aa    MW: 52953.2 Da    PI: 6.8513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034649t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-10324372355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Thecc1EG034649t1 324 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 372
                       58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.47E-11319376No hitNo description
SuperFamilySSF474598.11E-17319388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485321371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16322389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-7324372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MFSGNKRLHC SKRMLQSEVS FTLTSSQFYK AAKVEFLRIW VFSLGIYSMA SGDNDDVGFK  60
NRHESLMNCP SSQINTNPFS DKVDGMAMSS ISMYNKPSNA SDPFFGSSWD PIVSLSQSES  120
LVGSSMVSHS EFANSHYPLL MENQGITSTA HFSQYQSDPS FVELVPKLPG FGSGNWSEMV  180
GPFSLPQCGQ IANGKCPQNY ALNTEVGNER ACTNSTQSRD EHQLSDEGVV GASPNGKRRK  240
RVPESNSPLR SYQNADEEPQ KDPSGESSDV PKGQDEKIQK TEQITGVNSR GKQIAKQAKD  300
SSQTGEAPKE NYIHVRARRG QATNSHSLAE RVRREKISER MRLLQELVPG CNKITGKAVM  360
LDEIINYVQS LQQQVEFLSM KLATVNPELN IDLERVLSKD ILHSRGGSAG ILGFGPGLNS  420
SHPFPPRIFP GTISGVPSTN PQFPPLPQTV LDNELQNLFQ MGYDSSSAMD SLGPNGRLKS  480
EL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981390.10.0PREDICTED: transcription factor bHLH74 isoform X2
SwissprotQ6NKN94e-99BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A061FEC80.0A0A061FEC8_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY156500.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-100bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]