PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG034649t1 | ||||||||
Common Name | TCM_034649 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 483aa MW: 52953.2 Da PI: 6.8513 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 5e-10 | 324 | 372 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Thecc1EG034649t1 324 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 372 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.47E-11 | 319 | 376 | No hit | No description |
SuperFamily | SSF47459 | 8.11E-17 | 319 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 321 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 322 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-7 | 324 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 327 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 483 aa Download sequence Send to blast |
MFSGNKRLHC SKRMLQSEVS FTLTSSQFYK AAKVEFLRIW VFSLGIYSMA SGDNDDVGFK 60 NRHESLMNCP SSQINTNPFS DKVDGMAMSS ISMYNKPSNA SDPFFGSSWD PIVSLSQSES 120 LVGSSMVSHS EFANSHYPLL MENQGITSTA HFSQYQSDPS FVELVPKLPG FGSGNWSEMV 180 GPFSLPQCGQ IANGKCPQNY ALNTEVGNER ACTNSTQSRD EHQLSDEGVV GASPNGKRRK 240 RVPESNSPLR SYQNADEEPQ KDPSGESSDV PKGQDEKIQK TEQITGVNSR GKQIAKQAKD 300 SSQTGEAPKE NYIHVRARRG QATNSHSLAE RVRREKISER MRLLQELVPG CNKITGKAVM 360 LDEIINYVQS LQQQVEFLSM KLATVNPELN IDLERVLSKD ILHSRGGSAG ILGFGPGLNS 420 SHPFPPRIFP GTISGVPSTN PQFPPLPQTV LDNELQNLFQ MGYDSSSAMD SLGPNGRLKS 480 EL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017981390.1 | 0.0 | PREDICTED: transcription factor bHLH74 isoform X2 | ||||
Swissprot | Q6NKN9 | 4e-99 | BH074_ARATH; Transcription factor bHLH74 | ||||
TrEMBL | A0A061FEC8 | 0.0 | A0A061FEC8_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | ||||
STRING | EOY15650 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5196 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10120.1 | 1e-100 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG034649t1 |
Entrez Gene | 18591929 |
Publications ? help Back to Top | |||
---|---|---|---|
|