PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034634t1
Common NameTCM_034634
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 341aa    MW: 38301.1 Da    PI: 7.7868
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034634t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l+++++q+G+g +W + ++++g++R++k+c++rw++yl
  Thecc1EG034634t1 14 KGPWSPEEDAKLKEYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP
2Myb_DNA-binding38.62.5e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +++eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Thecc1EG034634t1  69 GGFSEEEDKIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.276966IPR017930Myb domain
SuperFamilySSF466896.53E-2711109IPR009057Homeodomain-like
SMARTSM007171.2E-131364IPR001005SANT/Myb domain
PfamPF002491.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-251569IPR009057Homeodomain-like
CDDcd001671.54E-101662No hitNo description
SMARTSM007173.9E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129416.46767117IPR017930Myb domain
PfamPF002495.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2370117IPR009057Homeodomain-like
CDDcd001673.09E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLKEYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDKIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQSRRG NSLKQEMKRG NGNSMIPDHN NQSPYWPELP VLAPIPYSSE DQRIDSQASM  180
RRLLIKLGGR FSEAEHVISD GTTLHQFPND SSSTQQLYEQ TVHMPSSSPP MDALNNNIDT  240
QFVNSPYTTI DATNLHMLQG QSSFSSELQE MAYSNPQRLD GMEFLYGEDM INNRAVNSCV  300
SIGWGDTSSL VCPPVTSEYG GMQQGILQEY AFSELRYPGA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9702621e-124JF970262.1 Quercus suber R2R3-MYB transcription factor MYB1.1 (MYB1) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018408.20.0PREDICTED: transcription factor MYB36
TrEMBLA0A061FFF30.0A0A061FFF3_THECC; Myb domain protein 84
STRINGEOY156330.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-76myb domain protein 84
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]