PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034627t1
Common NameTCM_034627
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TALE
Protein Properties Length: 370aa    MW: 42200 Da    PI: 6.3296
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034627t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-092963312055
                       HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Thecc1EG034627t1 296 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 331
                       4679*****************************885 PP
2ELK37.93.8e-13251272122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK++LlrKYsgyL+sLkqE+s
  Thecc1EG034627t1 251 ELKNHLLRKYSGYLSSLKQELS 272
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-22107151IPR005540KNOX1
PfamPF037902.7E-23108150IPR005540KNOX1
SMARTSM012564.3E-28158209IPR005541KNOX2
PfamPF037918.7E-23163207IPR005541KNOX2
PROSITE profilePS5121311.296251271IPR005539ELK domain
SMARTSM011883.5E-7251272IPR005539ELK domain
PfamPF037892.6E-10251272IPR005539ELK domain
PROSITE profilePS5007113.005271334IPR001356Homeobox domain
SuperFamilySSF466896.84E-20272346IPR009057Homeodomain-like
SMARTSM003898.8E-13273338IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-27276337IPR009057Homeodomain-like
CDDcd000861.79E-11283335No hitNo description
PfamPF059201.4E-16291330IPR008422Homeobox KN domain
PROSITE patternPS000270309332IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDEYNQLNEN STPRGNFLYA SPVLAPNSSP YGRASSGSNV SNQQAQMPLT SFHLQSSECY  60
QSEAHPIVKT EASTSQHGQK FHYPLLRGHQ AIHHQQEGNE SSSTEVEAIK AKIIAHPQYS  120
NLLEAYMDCQ KVGAPPEVAA RLAAARQEFE ARQRSSVTSR DNSKDPELDQ FMEAYYDMLV  180
KYREELTRPI QEALDFMRRI EAQLNMLSNG PVRIFNSDEK CEGVGSSEED QDNSGGETEL  240
PEIDPRAEDR ELKNHLLRKY SGYLSSLKQE LSKKKKKGKL PKEARQKLLS WWELHYKWPY  300
PSETEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF MVMDGLHPQN AALYMDGHYM  360
GDGPYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018399.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A061FMA10.0A0A061FMA1_THECC; KNOTTED-like from
STRINGEOY156240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65662335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-139KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]